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      Draft Genome Sequence of Agrococcus baldri Strain Marseille-P2731

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          ABSTRACT

          Agrococcus baldri strain Marseille-P2731 was isolated from a Siberian permafrost specimen dated around 10 million years. The 3,021,022-bp genome of strain Marseille-P2731, with a 71.82% G+C content, includes 2,844 protein-coding genes, 72 toxin/antitoxin modules, nine bacteriocin-encoding genes, and 1,266 genes associated with mobilome.

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          tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

          T. M. Lowe, S. Eddy (1997)
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            Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall.

            James Weiss, Rebecca K. Martin, I Groth … (1995)
            Two strains of a new gram-positive coryneform bacterium isolated from soil and from a sandstone surface are described. Strain 2002-39/1T (T = type strain) is a coccoid, nonmotile, non-acid-fast, microaerophilic organism. The menaquinones of this strain are MK-12 and MK-11, and the main components of the whole-cell sugars are glucose and rhamnose. No mycolic acids are present. The G+C content of the DNA is 74 mol%. Comparative 16S ribosomal DNA studies and a cell wall analysis revealed that this strain represents a new genus belonging to the group of actinomycetes that have diaminobutyric acid in their peptidoglycans. The second strain, strain ST54, which was isolated from a sandstone surface, had the same characteristic features as strain 2002-39/1T. The name Agrococcus jenensis gen. nov., sp. nov., is proposed for these organisms. The type strain is strain 2002-39/1, which has been deposited in the German Collection of Microorganisms and Cell Cultures as strain DSM 9580.
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              Agrococcus baldri sp. nov., isolated from the air in the 'Virgilkapelle' in Vienna.

              R Rossello, Christian Zlamala, Peter Kämpfer … (2002)
              Five coccoid, Gram-positive strains were isolated from the air of the 'Virgilkapelle' in Vienna. A representative of these five strains, V-108T, shared 99.0 and 98.4% 16S rDNA sequence similarity, respectively, with Agrococcus jenensis DSM 9580 and Agrococcus citreus DSM 12453T. Colonies of the five strains were white when grown in the dark and turned yellow in the light. The strains displayed highly similar biochemical and physiological characteristics and showed only small differences in their protein patterns obtained after SDS-PAGE. Based on Fourier-transform infra-red (FT-IR) spectra, the five strains were grouped together and separated from the other members of the genus, A. jenensis and A. citreus. Chemotaxonomic characteristics analysed from selected members of the five isolates, including polar lipids, quinone systems, polyamine patterns, cell wall composition and fatty acid profiles, were in good agreement with those of the two species of the genus Agrococcus described to date. The G+C content of the genomic DNA was determined to be within the narrow range of 73.8-74.9 mol%. The results of DNA-DNA hybridization with A. citreus DSM 12453T and A. jenensis DSM 9580T, as well as differences in biochemical/physiological characteristics, peptidoglycan composition, fatty acids, polar lipid profiles and FT-IR spectra, demonstrated that the five isolates represent a novel species of the genus Agrococcus. The name Agrococcus baldri sp. nov. is proposed for the novel species, of which strain V-108T (= DSM 14215T = CCM 4953T) is the type strain.
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                Author and article information

                Journal
                Journal ID (nlm-ta): Genome Announc
                Journal ID (iso-abbrev): Genome Announc
                Journal ID (hwp): ga
                Journal ID (pmc): ga
                Journal ID (publisher-id): GA
                Title: Genome Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2169-8287
                Publication date (Electronic): 9 March 2017
                Publication date Collection: March 2017
                Volume: 5
                Issue: 10
                Electronic Location Identifier: e00015-17
                Affiliations
                [a ]Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UM 63, CNRS 7278, IRD 198, INSERM 1095, Institut Hospitalo-Universitaire Méditerranée-Infection, Faculté de Médecine, Marseille, France
                [b ]Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia
                Author notes
                Address correspondence to Pierre-Edouard Fournier, pierre-edouard.fournier@ 123456univ-amu.fr .
                Article
                Publisher ID: genomeA00015-17
                DOI: 10.1128/genomeA.00015-17
                PMC ID: 5347231
                PubMed ID: 28280011
                SO-VID: 5b578801-795c-4193-a15a-df9cad3f8e2e
                Copyright © Copyright © 2017 Afouda et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Date received : 5 January 2017
                Date accepted : 11 January 2017
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 5, Pages: 2, Words: 857
                Funding
                Funded by: Mediterranee-Infection Foundation
                Categories
                Subject: Prokaryotes
                Custom metadata
                cover-date March 2017

                ScienceOpen disciplines: Genetics
                Data availability:
                ScienceOpen disciplines: Genetics

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