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Complete Nucleotide Sequence of a French Isolate of Maize rough dwarf virus, a Fijivirus Member in the Family Reoviridae

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Author(s): L. Svanella-Dumas ^a , A. Marais ^a , C. Faure ^a , S. Theil ^a , J. B. Thibord ^b , T. Candresse ^a ^,

Publication date (Electronic): 21 July 2016

Journal: Genome Announcements

Publisher: American Society for Microbiology

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Abstract

The complete nucleotide sequence of a French isolate of Maize rough dwarf virus (MRDV) was determined by next-generation sequencing and compared with the single available complete sequence and with the partial sequences of two additional isolates available in online databases.

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Most cited references 4

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Association of Little cherry virus 1 (LChV1) with the Shirofugen stunt disease and characterization of the genome of a divergent LChV1 isolate.

Thierry Candresse, Armelle Marais, Pascal Gentit … (2013)

Double-stranded RNAs purified from the V2356 ('Successa') sour cherry source of the Shirofugen stunt disease (SSD) were sequenced using a 454 pyrosequencing multiplex approach. The 15,646 reads obtained were assembled into 279 contigs, 5 of which, totaling almost 16.9 kbp and 5,332 reads (34% of sample reads), showed high Blast scores and homology to Little cherry virus 1 (LChV1). The five contigs were further assembled manually into three supercontigs spanning the full LChV1 genome with only two small gaps (17 and 55 bases). Completion of the sequencing of the viral genome was performed using targeted polymerase chain reaction and primers designed from the contigs. No evidence for the presence of other viral agents in the V2356 source could be obtained in the remaining contigs or singletons. The V2356 LChV1 isolate is only ≈76% identical with the reference complete LChV1 sequences and, in particular, with the ITMAR isolate associated with the Kwanzan stunting syndrome. However, it is highly homologous (97 to 100% identity) in two short genome regions with divergent LChV1 from North America, providing the first complete sequence for such divergent isolates. Although not providing a definite proof, the failure to detect any other viral agent in the V2356 SSD source and the identification of LChV1 in a second, independent, source of the disease suggests that LChV1 isolates could be responsible for the SSD syndrome.

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Understanding the epidemiological factors that intensify the incidence of maize rough dwarf disease in Spain : Epidemiology of maize rough dwarf disease

M.A. Achon, L. Serrano, J. Sabate … (2015)

0 comments Cited 10 times – based on 0 reviews      Review now

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Cloning of the maize rough dwarf virus genome: Molecular confirmation of the plant-reovirus classification scheme and identification of two large nonoverlapping coding domains within a single genomic segment

Donald Nuss, Cristina Marzachì, Guido Boccardo (1991)

0 comments Cited 6 times – based on 0 reviews      Review now

Author and article information

Journal

Journal ID (nlm-ta): Genome Announc

Journal ID (iso-abbrev): Genome Announc

Journal ID (hwp): ga

Journal ID (pmc): ga

Journal ID (publisher-id): GA

Title: Genome Announcements

Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )

ISSN (Electronic): 2169-8287

Publication date (Electronic): 21 July 2016

Publication date Collection: Jul-Aug 2016

Volume: 4

Issue: 4

Electronic Location Identifier: e00623-16

Affiliations

[a ]UMR 1332 Biologie du Fruit et Pathologie, INRA, Univ Bordeaux, Villenave d’Ornon, France

[b ]ARVALIS, Institut du Végétal, AGROSITE de Pau-Montardon, Chemin de Pau, Montardon, France

Author notes

Address correspondence to T. Candresse, candress@ 123456bordeaux.inra.fr .

Article

Publisher ID: genomeA00623-16

DOI: 10.1128/genomeA.00623-16

PMC ID: 4956440

PubMed ID: 27445367

SO-VID: 5b683cf2-6606-451d-8b9a-6995438c5c10

Copyright © Copyright © 2016 Svanella-Dumas et al.

License:

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

History

Date received : 10 May 2016

Date accepted : 1 June 2016

Page count

Figures: 0, Tables: 0, Equations: 0, References: 7, Pages: 2, Words: 1071

Categories

Subject: Viruses

Custom metadata

cover-date July/August 2016

ScienceOpen disciplines: Genetics

Data availability:

ScienceOpen disciplines: Genetics

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