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      Biogeographic Patterns of Ectomycorrhizal Fungal Communities Associated With Castanopsis sieboldii Across the Japanese Archipelago

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          Abstract

          Biogeographic patterns in ectomycorrhizal (ECM) fungal communities and their drivers have been elucidated, including effects of host tree species and abiotic (climatic and edaphic) conditions. At these geographic scales, genotypic diversity and composition of single host tree species change with spatial and environmental gradients, reflecting their historical dispersal events. However, whether the host genotypes can be associated with the biogeographic patterns of ECM communities remains unclear. We investigated the biogeographic pattern of ECM fungal community associated with the single host species Castanopsis sieboldii (Fagaceae), whose genotypic diversity and composition across the Japanese archipelago has already been evaluated. ECM communities were investigated in 12 mature Castanopsis-dominated forests covering almost the entire distribution range of C. sieboldii, and we quantified the effect of host genotypes on the biogeographic pattern of ECM fungal communities. Richness and community composition of ECM fungi changed with latitude and longitude; these biogeographic changes of ECM community were significantly correlated with host genotypic variables. Quantitative analyses showed a higher relative explanatory power of climatic and spatial variables than that of host genotypic variables for the biogeographic patterns in the ECM community. Our results suggest historical events of host dispersal can affect the biogeographic patterns of the ECM fungal community, while their explanation power was lower than that for climatic filtering and/or fungal dispersal.

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          Microbial biogeography: putting microorganisms on the map.

          We review the biogeography of microorganisms in light of the biogeography of macroorganisms. A large body of research supports the idea that free-living microbial taxa exhibit biogeographic patterns. Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity. However, recent studies also dispute the idea that 'everything is everywhere'. We also consider how the processes that generate and maintain biogeographic patterns in macroorganisms could operate in the microbial world.
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            Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

            We constructed error-correcting DNA barcodes that allow one run of a massively parallel pyrosequencer to process up to 1,544 samples simultaneously. Using these barcodes we processed bacterial 16S rRNA gene sequences representing microbial communities in 286 environmental samples, corrected 92% of sample assignment errors, and thus characterized nearly as many 16S rRNA genes as have been sequenced to date by Sanger sequencing.
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              Phylogeographic insights into cryptic glacial refugia.

              The glacial episodes of the Quaternary (2.6 million years ago-present) were a major factor in shaping the present-day distributions of extant flora and fauna, with expansions and contractions of the ice sheets rendering large areas uninhabitable for most species. Fossil records suggest that many species survived glacial maxima by retreating to refugia, usually at lower latitudes. Recently, phylogeographic studies have given support to the existence of previously unknown, or cryptic, refugia. Here we summarise many of these insights into the glacial histories of species in cryptic refugia gained through phylogeographic approaches. Understanding such refugia might be important as the Earth heads into another period of climate change, in terms of predicting the effects on species distribution and survival.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                14 November 2019
                2019
                : 10
                : 2656
                Affiliations
                [1] 1Graduate School of Simulation Studies, University of Hyogo , Kobe, Japan
                [2] 2Department of Biological Sciences, Faculty of Science, Kanagawa University , Hiratsuka, Japan
                [3] 3Graduate School of Human and Environmental Studies, Kyoto University , Kyoto, Japan
                [4] 4Department of Life Science Frontiers, Center for iPS Cell Research and Application, Kyoto University , Kyoto, Japan
                [5] 5Department of Environmental Systems Science, Faculty of Science and Engineering, Doshisha University , Kyoto, Japan
                Author notes

                Edited by: Mohamed Hijri, Université de Montréal, Canada

                Reviewed by: Risto Kasanen, University of Helsinki, Finland; Michael Heads, Buffalo Society of Natural Sciences, United States

                *Correspondence: Shunsuke Matsuoka, code_matuoka@ 123456hotmail.com

                This article was submitted to Fungi and Their Interactions, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2019.02656
                6868053
                31798567
                5bd56a0b-e8e0-42da-a45b-f9464b0a08bf
                Copyright © 2019 Matsuoka, Iwasaki, Sugiyama, Kawaguchi, Doi and Osono.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 24 July 2019
                : 31 October 2019
                Page count
                Figures: 4, Tables: 2, Equations: 0, References: 87, Pages: 13, Words: 0
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                assembly process,biogeography,ectomycorrhiza,fungal community,host genotype,spatial structure

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