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      A star is torn—molecular analysis divides the Mediterranean population of Poli’s stellate barnacle, Chthamalus stellatus (Cirripedia, Chtamalidae)

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          Abstract

          Poli’s stellate barnacle, Chthamalus stellatus Poli, populates the Mediterranean Sea, the North-Eastern Atlantic coasts, and the offshore Eastern Atlantic islands. Previous studies have found apparent genetic differences between the Atlantic and the Mediterranean populations of C. stellatus, suggesting possible geological and oceanographic explanations for these differences. We have studied the genetic diversity of 14 populations spanning from the Eastern Atlantic to the Eastern Mediterranean, using two nuclear genes sequences revealing a total of 63 polymorphic sites. Both genotype-based, haplotype-based and the novel SNP distribution population-based methods have found that these populations represent a geographic cline along the west to east localities. The differences in SNP distribution among populations further separates a major western cluster into two smaller clusters, the Eastern Atlantic and the Western Mediterranean. It also separates the major eastern cluster into two smaller clusters, the Mid-Mediterranean and Eastern Mediterranean. We suggested here environmental conditions like surface currents, water salinity and temperature as probable factors that have formed the population structure. We demonstrate that C. stellatus is a suitable model organism for studying how geological events and hydrographic conditions shape the fauna in the Mediterranean Sea.

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          DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets.

          We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments. This major upgrade incorporates novel functionalities to analyze large data sets, such as those generated by high-throughput sequencing technologies. Among other features, DnaSP 6 implements: 1) modules for reading and analyzing data from genomic partitioning methods, such as RADseq or hybrid enrichment approaches, 2) faster methods scalable for high-throughput sequencing data, and 3) summary statistics for the analysis of multi-locus population genetics data. Furthermore, DnaSP 6 includes novel modules to perform single- and multi-locus coalescent simulations under a wide range of demographic scenarios. The DnaSP 6 program, with extensive documentation, is freely available at http://www.ub.edu/dnasp.
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            Chronology, causes and progression of the Messinian salinity crisis

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              Late Miocene Desiccation of the Mediterranean

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                Author and article information

                Contributors
                Journal
                PeerJ
                PeerJ
                peerj
                peerj
                PeerJ
                PeerJ Inc. (San Diego, USA )
                2167-8359
                21 July 2021
                2021
                : 9
                : e11826
                Affiliations
                [1 ]Faculty of Marine Sciences, Ruppin Academic Center , Mikhmoret, Israel
                [2 ]The Mina & Everard Goodman Faculty of Life Sciences, Bar-Ilan University , Ramat-Gan, Israel
                [3 ]Department of Ecology, Evolution and Behavior, and the Federmann Center for the Study of Rationality, the Hebrew University of Jerusalem , Jerusalem, Israel
                Article
                11826
                10.7717/peerj.11826
                8308608
                34327065
                5cc14c99-8250-439f-9e1e-a863a8e3ec35
                ©2021 Tikochinski et al.

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.

                History
                : 30 March 2021
                : 30 June 2021
                Funding
                Funded by: The Israel Science Foundation (ISF)
                Award ID: 574/14
                This study was supported by grant 574/14 of the Israel Science Foundation (ISF) to Yair Achituv: “Following Darwin: The evolution of the acorn barnacles”. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Biodiversity
                Biogeography
                Marine Biology
                Molecular Biology
                Population Biology

                mediterranean sea,ef1,naka,poli’s stellate barnacle,star barnacle,strait of gibraltar,atlantic current,snp distribution

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