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      The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family.

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          Abstract

          To date chloroplast genomes are available only for members of the non-protein amino acid-accumulating clade (NPAAA) Papilionoid lineages in the legume family (i.e. Millettioids, Robinoids and the 'inverted repeat-lacking clade', IRLC). It is thus very important to sequence plastomes from other lineages in order to better understand the unusual evolution observed in this model flowering plant family. To this end, the plastome of a lupine species, Lupinus luteus, was sequenced to represent the Genistoid lineage, a noteworthy but poorly studied legume group.

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          Author and article information

          Journal
          Ann. Bot.
          Annals of botany
          1095-8290
          0305-7364
          Jun 2014
          : 113
          : 7
          Affiliations
          [1 ] UMR CNRS 6553 Ecobio, OSUR (Observatoire des Sciences de l'Univers de Rennes), Université de Rennes 1/Université Européenne de Bretagne, 35 042 Rennes, France.
          [2 ] Plate-forme Génomique Environnementale et Fonctionnelle, OSUR-CNRS, Université de Rennes 1, 35042 Rennes, France.
          [3 ] UMR CNRS 6553 Ecobio, OSUR (Observatoire des Sciences de l'Univers de Rennes), Université de Rennes 1/Université Européenne de Bretagne, 35 042 Rennes, France kader.ainouche@univ-rennes1.fr.
          Article
          mcu050
          10.1093/aob/mcu050
          24769537
          5dcd41af-ce9e-4e0a-aba7-13cd5a4ac86b
          © The Author 2014. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.
          History

          36-kb inversion,European yellow lupine,Fabaceae phylogeny,Genistoid clade,Lupinus luteus,Papilionoidae,chloroplast genome evolution,flip–flop recombination,functional gene transfer,inverted repeats,legume,lineage-specific marker,plastome hotspots,repeated plastid sequences,sequence divergence,structural plastid rearrangement

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