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      Genomic Analysis Identifies New Loci Associated With Motor Complications in Parkinson's Disease

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          Abstract

          Background: Parkinson's disease (PD) is a common neurodegenerative disorder, characterized by a clinical symptomatology involving both motor and non-motor symptoms. Motor complications associated with long-term dopaminergic treatment include motor fluctuations and levodopa-induced dyskinesia (LID), which may have a major impact on the quality of life. The clinical features and onset time of motor complications in the disease course are heterogeneous, and the etiology remains unknown.

          Objective: We aimed to identify genomic variants associated with the development of motor fluctuations and LID at 5 years after the onset of PD.

          Methods: Genomic data were obtained using Affymetrix Axiom KORV1.1 array, including an imputation genome-wide association study (GWAS) grid and other GWAS loci; functional variants of the non-synonymous exome; pharmacogenetic variants; variants in genes involved in absorption, distribution, metabolism, and excretion of drugs; and expression quantitative trait loci in 741 patients with PD.

          Results: FAM129B single-nucleotide polymorphism (SNP) rs10760490 was nominally associated with the occurrence of motor fluctuations at 5 years after the onset of PD [odds ratio (OR) = 2.9, 95% confidence interval (CI) = 1.8–4.8, P = 6.5 × 10 −6]. GALNT14 SNP rs144125291 was significantly associated with the occurrence of LID (OR = 5.5, 95% CI = 2.9–10.3, P = 7.88 × 10 −9) and was still significant after Bonferroni correction. Several other genetic variants were associated with the occurrence of motor fluctuations or LID, but the associations were not significant after Bonferroni correction.

          Conclusion: This study identified new loci associated with the occurrence of motor fluctuations and LID at 5 years after the onset of PD. However, further studies are needed to confirm our findings.

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          Most cited references46

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          Parkinson's disease. First of two parts.

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            Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.

            Glycosylation of proteins is an essential process in all eukaryotes and a great diversity in types of protein glycosylation exists in animals, plants and microorganisms. Mucin-type O-glycosylation, consisting of glycans attached via O-linked N-acetylgalactosamine (GalNAc) to serine and threonine residues, is one of the most abundant forms of protein glycosylation in animals. Although most protein glycosylation is controlled by one or two genes encoding the enzymes responsible for the initiation of glycosylation, i.e. the step where the first glycan is attached to the relevant amino acid residue in the protein, mucin-type O-glycosylation is controlled by a large family of up to 20 homologous genes encoding UDP-GalNAc:polypeptide GalNAc-transferases (GalNAc-Ts) (EC 2.4.1.41). Therefore, mucin-type O-glycosylation has the greatest potential for differential regulation in cells and tissues. The GalNAc-T family is the largest glycosyltransferase enzyme family covering a single known glycosidic linkage and it is highly conserved throughout animal evolution, although absent in bacteria, yeast and plants. Emerging studies have shown that the large number of genes (GALNTs) in the GalNAc-T family do not provide full functional redundancy and single GalNAc-T genes have been shown to be important in both animals and human. Here, we present an overview of the GalNAc-T gene family in animals and propose a classification of the genes into subfamilies, which appear to be conserved in evolution structurally as well as functionally.
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              Parkinson's disease. Second of two parts.

              At no time in the past have the basic and clinical sciences applied to Parkinson's disease been so active. Experimental therapies under study at present promise to improve on the limitations of existing treatments. Future progress in understanding the causation and pathogenesis of the disorder will permit the development of new treatments that will slow, halt, or even reverse the currently inexorable progressive course of Parkinson's disease.
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                Author and article information

                Contributors
                Journal
                Front Neurol
                Front Neurol
                Front. Neurol.
                Frontiers in Neurology
                Frontiers Media S.A.
                1664-2295
                07 July 2020
                2020
                : 11
                : 570
                Affiliations
                [1] 1Department of Neurology, Kyungpook National University Hospital , Daegu, South Korea
                [2] 2Department of Neurology, Asan Medical Center, University of Ulsan College of Medicine , Seoul, South Korea
                [3] 3Department of Neurology & Parkinson's Disease Center, Guro Hospital, Korea University , Seoul, South Korea
                [4] 4Department of Neurology, Dobong Hospital , Seoul, South Korea
                [5] 5Department of Neurology, Bobath Memorial Hospital , Seongnam-si, South Korea
                [6] 6Department of Neurology, Best Heals Hospital , Ansan-si, South Korea
                [7] 7Department of Neurology, Metro Hospital , Anyang, South Korea
                [8] 8Department of Neurology, The Good Light Hospital , Gwangju, South Korea
                Author notes

                Edited by: Nobutaka Hattori, Juntendo University, Japan

                Reviewed by: Graziella Mangone, INSERM CIC1422 CIC Pitié Neurosciences, France; Luca Marsili, University of Cincinnati, United States

                *Correspondence: Sun Ju Chung sjchung@ 123456amc.seoul.kr

                This article was submitted to Neurogenetics, a section of the journal Frontiers in Neurology

                Article
                10.3389/fneur.2020.00570
                7358548
                5e4d1a49-adde-426e-828e-50af91fc3ab9
                Copyright © 2020 Ryu, Park, Choi, Kim, Park, Jo, Kim, Kim, Kim, Kim, Koh and Chung.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 23 January 2020
                : 19 May 2020
                Page count
                Figures: 3, Tables: 6, Equations: 0, References: 59, Pages: 11, Words: 7596
                Funding
                Funded by: Ministry of Health and Welfare 10.13039/100008903
                Categories
                Neurology
                Original Research

                Neurology
                genome-wide association study,genomic variants,parkinson's disease,motor fluctuations,levodopa-induced dyskinesia

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