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      Role of the N-terminal lid in regulating the interaction of phosphorylated MDMX with p53

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          Abstract

          Murine double minute 4 protein (MDMX) is crucial for the regulation of the tumor suppressor protein p53. Phosphorylation of the N-terminal domain of MDMX is thought to affect its binding with the transactivation domain of p53, thus playing a role in p53 regulation. In this study, the effects of MDMX phosphorylation on the binding of p53 were investigated using molecular dynamics simulations. It is shown that in addition to the previously proposed mechanism in which phosphorylated Y99 of MDMX inhibits p53 binding through steric clash with P27 of p53, the N-terminal lid of MDMX also appears to play an important role in regulating the phosphorylation-dependent interactions between MDMX and p53. In the proposed mechanism, phosphorylated Y99 aids in pulling the lid into the p53-binding pocket, thus inhibiting the binding between MDMX and p53. Rebinding of p53 appears to be facilitated by the subsequent phosphorylation of Y55, which draws the lid away from the binding pocket by electrostatic attraction of the lid's positively charged N-terminus. The ability to target these mechanisms for the proper regulation of p53 could have important implications for understanding cancer biology and for drug development.

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          Most cited references44

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          Scalable web services for the PSIPRED Protein Analysis Workbench

          Here, we present the new UCL Bioinformatics Group’s PSIPRED Protein Analysis Workbench. The Workbench unites all of our previously available analysis methods into a single web-based framework. The new web portal provides a greatly streamlined user interface with a number of new features to allow users to better explore their results. We offer a number of additional services to enable computationally scalable execution of our prediction methods; these include SOAP and XML-RPC web server access and new HADOOP packages. All software and services are available via the UCL Bioinformatics Group website at http://bioinf.cs.ucl.ac.uk/.
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            Analytical molecular surface calculation

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              Synthesis of proteins by native chemical ligation.

              A simple technique has been devised that allows the direct synthesis of native backbone proteins of moderate size. Chemoselective reaction of two unprotected peptide segments gives an initial thioester-linked species. Spontaneous rearrangement of this transient intermediate yields a full-length product with a native peptide bond at the ligation site. The utility of native chemical ligation was demonstrated by the one-step preparation of a cytokine containing multiple disulfides. The polypeptide ligation product was folded and oxidized to form the native disulfide-containing protein molecule. Native chemical ligation is an important step toward the general application of chemistry to proteins.
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                Author and article information

                Journal
                Oncotarget
                Oncotarget
                Oncotarget
                ImpactJ
                Oncotarget
                Impact Journals LLC
                1949-2553
                22 December 2017
                1 December 2017
                : 8
                : 68
                : 112825-112840
                Affiliations
                1 Bioinformatics Institute, Agency for Science, Technology and Research (A*STAR), Singapore
                2 p53 Laboratory, Agency for Science, Technology and Research (A*STAR), Singapore
                3 Department of Biological Sciences, National University of Singapore, Singapore
                4 School of Biological Sciences, Nanyang Technological University, Singapore
                Author notes
                Correspondence to: Chandra S. Verma, chandra@ 123456bii.a-star.edu.sg
                Article
                22829
                10.18632/oncotarget.22829
                5762554
                5e50776a-282b-4604-8565-1f9b8258be6e
                Copyright: © 2017 Chan et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 3 August 2017
                : 5 October 2017
                Categories
                Research Paper

                Oncology & Radiotherapy
                mdmx/mdm4,phosphotyrosine,p53,protein–protein interaction,molecular dynamics

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