8
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      p62/SQSTM1-droplet serves as a platform for autophagosome formation and anti-oxidative stress response

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Autophagy contributes to the selective degradation of liquid droplets, including the P-Granule, Ape1-complex and p62/SQSTM1-body, although the molecular mechanisms and physiological relevance of selective degradation remain unclear. In this report, we describe the properties of endogenous p62-bodies, the effect of autophagosome biogenesis on these bodies, and the in vivo significance of their turnover. p62-bodies are low-liquidity gels containing ubiquitin and core autophagy-related proteins. Multiple autophagosomes form on the p62-gels, and the interaction of autophagosome-localizing Atg8-proteins with p62 directs autophagosome formation toward the p62-gel. Keap1 also reversibly translocates to the p62-gels in a p62-binding dependent fashion to activate the transcription factor Nrf2. Mice deficient for Atg8-interaction-dependent selective autophagy show that impaired turnover of p62-gels leads to Nrf2 hyperactivation in vivo. These results indicate that p62-gels are not simple substrates for autophagy but serve as platforms for both autophagosome formation and anti-oxidative stress.

          Abstract

          Liquid-liquid phase separation of p62/SQSTM1 has been previously described, although the significance in vivo remains unclear. Here the authors show p62 droplets contain ubiquitin, autophagy-related proteins and Keap1 to serve as platform of not only autophagosome formation but also Nrf2 activation.

          Related collections

          Most cited references69

          • Record: found
          • Abstract: found
          • Article: not found

          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

            DAVID bioinformatics resources consists of an integrated biological knowledgebase and analytic tools aimed at systematically extracting biological meaning from large gene/protein lists. This protocol explains how to use DAVID, a high-throughput and integrated data-mining environment, to analyze gene lists derived from high-throughput genomic experiments. The procedure first requires uploading a gene list containing any number of common gene identifiers followed by analysis using one or more text and pathway-mining tools such as gene functional classification, functional annotation chart or clustering and functional annotation table. By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Biomolecular condensates: organizers of cellular biochemistry

              In addition to membrane-bound organelles, eukaryotic cells feature various membraneless compartments, including the centrosome, the nucleolus and various granules. Many of these compartments form through liquid–liquid phase separation, and the principles, mechanisms and regulation of their assembly as well as their cellular functions are now beginning to emerge.
                Bookmark

                Author and article information

                Contributors
                eeva-liisa.eskelinen@utu.fi
                mkomatsu@juntendo.ac.jp
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                4 January 2021
                4 January 2021
                2021
                : 12
                : 16
                Affiliations
                [1 ]GRID grid.258269.2, ISNI 0000 0004 1762 2738, Department of Physiology, , Juntendo University Graduate School of Medicine, ; Bunkyo-ku, Tokyo 113-8421 Japan
                [2 ]GRID grid.7737.4, ISNI 0000 0004 0410 2071, Molecular and Integrative Biosciences Research Programme, , University of Helsinki, ; Helsinki, 00014 Finland
                [3 ]GRID grid.258269.2, ISNI 0000 0004 1762 2738, Department of Cell Biology and Neuroscience, , Juntendo University Graduate School of Medicine, ; Bunkyo-ku, Tokyo 113-8421 Japan
                [4 ]GRID grid.411582.b, ISNI 0000 0001 1017 9540, Department of Anatomy and Histology, , Fukushima Medical University School of Medicine, ; Hikarigaoka, Fukushima 960-1295 Japan
                [5 ]GRID grid.258269.2, ISNI 0000 0004 1762 2738, Laboratory of Proteomics and Biomolecular Science, Research Support Center, , Juntendo University Graduate School of Medicine, ; Bunkyo-ku, Tokyo 113-8421 Japan
                [6 ]GRID grid.418798.b, ISNI 0000 0000 9187 2234, Institute of Microbial Chemistry (BIKAKEN), ; Shinagawa-ku, Tokyo 141-0021 Japan
                [7 ]GRID grid.260975.f, ISNI 0000 0001 0671 5144, Department of Animal Model Development, Brain Research Institute, , Niigata University, ; Niigata, 951-8510 Japan
                [8 ]Picobiology Institute, Graduate School of Life Science, University of Hyogo, 3-2-1, Kouto, Kamigori-cho, Ako-gun, Hyogo 678-1297 Japan
                [9 ]GRID grid.260975.f, ISNI 0000 0001 0671 5144, Bioinformatics Laboratory, , Niigata University Graduate School of Medical and Dental Sciences, ; Chuo-ku, Niigata 951-8510 Japan
                [10 ]GRID grid.69566.3a, ISNI 0000 0001 2248 6943, Department of Gene Expression Regulation, Institute of Development, Aging and Cancer, , Tohoku University, ; Sendai, 980-8575 Japan
                [11 ]GRID grid.411970.a, ISNI 0000 0004 0532 6499, Department of Biological Sciences and Biotechnology, College of Life Sciences and Nanotechnology, , Hannam University, ; Daejeon, 34430 Korea
                [12 ]GRID grid.26091.3c, ISNI 0000 0004 1936 9959, Department of Pharmaceutical Sciences, Faculty of Pharmacy, , Keio University, ; Minato-ku, 105-8512 Tokyo Japan
                [13 ]GRID grid.1374.1, ISNI 0000 0001 2097 1371, Institute of Biomedicine, , University of Turku, ; Turku, FI-20014 Finland
                Author information
                http://orcid.org/0000-0001-8453-7726
                http://orcid.org/0000-0002-5532-2547
                http://orcid.org/0000-0001-7024-2054
                http://orcid.org/0000-0001-8891-9190
                http://orcid.org/0000-0002-7704-8104
                http://orcid.org/0000-0002-7261-1033
                http://orcid.org/0000-0002-6757-8371
                http://orcid.org/0000-0002-0931-1708
                http://orcid.org/0000-0002-6940-8069
                http://orcid.org/0000-0001-9919-7111
                http://orcid.org/0000-0003-0006-7785
                http://orcid.org/0000-0001-7672-7722
                Article
                20185
                10.1038/s41467-020-20185-1
                7782522
                33397898
                5ec6ddcc-3ced-487e-9181-9ac759f165f2
                © The Author(s) 2021

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 18 May 2020
                : 17 November 2020
                Categories
                Article
                Custom metadata
                © The Author(s) 2021

                Uncategorized
                macroautophagy,lysosomes
                Uncategorized
                macroautophagy, lysosomes

                Comments

                Comment on this article