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      Characterization of the complete mitochondrial genome of the maize weevil, Sitophilus zeamais (Insecta: Coleoptera: Curculionidae) from Guizhou province

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          Abstract

          The complete mitochondrial genome of the maize weevil Sitophilus zeamais (GenBank accession number: MN905575) from Guizhou Province consists of a circular DNA molecule of 18,421 bp (with 75.69% A + T content), which is longer by 316 bp than that of the mitogenome of S. zeamais from Nigeria. The mitogenome comprises 13 protein-coding, 22 tRNA, and two rDNA genes. The protein-coding genes have typical ATN (Met) initiation codons and are terminated by typical TAN stop codons.

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          MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

          Sudhir Kumar, Glen Stecher, Koichiro Tamura (2016)
          We present the latest version of the Molecular Evolutionary Genetics Analysis (Mega) software, which contains many sophisticated methods and tools for phylogenomics and phylomedicine. In this major upgrade, Mega has been optimized for use on 64-bit computing systems for analyzing larger datasets. Researchers can now explore and analyze tens of thousands of sequences in Mega The new version also provides an advanced wizard for building timetrees and includes a new functionality to automatically predict gene duplication events in gene family trees. The 64-bit Mega is made available in two interfaces: graphical and command line. The graphical user interface (GUI) is a native Microsoft Windows application that can also be used on Mac OS X. The command line Mega is available as native applications for Windows, Linux, and Mac OS X. They are intended for use in high-throughput and scripted analysis. Both versions are available from www.megasoftware.net free of charge.
          Article 0 comments Cited 7168 times – based on 0 reviews     Review now
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            Cutadapt removes adapter sequences from high-throughput sequencing reads

            Marcel Martin (2011)
            Article 0 comments Cited 6678 times – based on 0 reviews     Review now
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              Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

              Daniel Zerbino, Ewan Birney (2008)
              We have developed a new set of algorithms, collectively called "Velvet," to manipulate de Bruijn graphs for genomic sequence assembly. A de Bruijn graph is a compact representation based on short words (k-mers) that is ideal for high coverage, very short read (25-50 bp) data sets. Applying Velvet to very short reads and paired-ends information only, one can produce contigs of significant length, up to 50-kb N50 length in simulations of prokaryotic data and 3-kb N50 on simulated mammalian BACs. When applied to real Solexa data sets without read pairs, Velvet generated contigs of approximately 8 kb in a prokaryote and 2 kb in a mammalian BAC, in close agreement with our simulated results without read-pair information. Velvet represents a new approach to assembly that can leverage very short reads in combination with read pairs to produce useful assemblies.
              Article 0 comments Cited 843 times – based on 0 reviews     Review now
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                Author and article information

                Journal
                Journal ID (nlm-ta): Mitochondrial DNA B Resour
                Journal ID (iso-abbrev): Mitochondrial DNA B Resour
                Journal ID (publisher-id): TMDN
                Journal ID (publisher-id): tmdn20
                Title: Mitochondrial DNA. Part B, Resources
                Publisher: Taylor & Francis
                ISSN (Electronic): 2380-2359
                Publication date Collection: 2020
                Publication date (Electronic): 28 February 2020
                Volume: 5
                Issue: 2
                Pages: 1244-1245
                Affiliations
                College of Mathematics and Information Science, Guiyang University , Guiyang, China
                Author notes
                CONTACT Xin Zhou zhouxinjgyu@ 123456163.com College of Mathematics and Information Science, Guiyang University , Guiyang 550005, China
                Article
                Publisher ID: 1731354
                DOI: 10.1080/23802359.2020.1731354
                PMC ID: 7510821
                SO-VID: 5f421c03-9d3f-406e-8dd0-cd58c9fe6daa
                Copyright statement: © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
                License:

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Date received : 05 February 2020
                Date accepted : 11 February 2020
                Page count
                Figures: 1, Tables: 0, Pages: 2, Words: 897
                Product
                Funding
                Funded by: Guiyang Science and Technology Bureau
                Funded by: Guiyang University
                Award ID: GYU-KYZ(2019 ∼ 2020)PT06-05
                This work was financially supported by the special funding of Guiyang Science and Technology Bureau and Guiyang University [GYU-KYZ(2019 ∼ 2020)PT06-05].
                Categories
                Subject: Mitogenome Announcement

                Keywords: sitophilus zeamais,the maize weevil,curculionidae,mitochondrial genome,stored-product insect
                Data availability:
                Keywords: sitophilus zeamais, the maize weevil, curculionidae, mitochondrial genome, stored-product insect

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