6
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Flavobacterium aerium sp. nov., a bacterium isolated from the air of the Icelandic volcanic island Surtsey

      research-article

      Read this article at

      ScienceOpenPublisherPMC
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          A novel bacterium, designated 19SA41, was isolated from the air of the Icelandic volcanic island Surtsey. Cells of strain 19SA41 are Gram-stain-negative, strictly aerobic, non-motile rods and form pale yellow-pigmented colonies. The strain grows at 4–30 °C (optimum, 22 °C), at pH 6–10 (optimum, pH 7.5) and with 0–4% NaCl (optimum, 0.5%). Phylogenetic analyses based on 16S rRNA gene sequences showed that 19SA41 belonged to the genus Flavobacterium and is most similar to Flavobacterium xinjiangense DSM 19743 T, with a sequence similarity of 96.52%. The new strain contained iso-C 15 : 0 (22%) and summed feature 3 (C 16∶1ω6c/C 16∶1ω7c) (20%) as the predominant fatty acids. The major respiratory quinone was menaquinone-6 (100%). The polar lipid profile consisted of phosphatidylethanolamine and several uncharacterized amino lipids, glycolipids and lipids. The genome of the new strain was 4.01 Mbp, and its G+C content was 33.2 mol%. Based on characterization and comparative results, using a polyphasic taxonomic approach, we propose that the new isolate represents a novel species of the genus Flavobacterium with the name Flavobacterium aerium sp. nov. The type strain is ISCaR-07695 T (=DSM 116640 T =UBOOC-M-3567 T).

          Related collections

          Most cited references33

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Trimmomatic: a flexible trimmer for Illumina sequence data

          Motivation: Although many next-generation sequencing (NGS) read preprocessing tools already existed, we could not find any tool or combination of tools that met our requirements in terms of flexibility, correct handling of paired-end data and high performance. We have developed Trimmomatic as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data. Results: The value of NGS read preprocessing is demonstrated for both reference-based and reference-free tasks. Trimmomatic is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested. Availability and implementation: Trimmomatic is licensed under GPL V3. It is cross-platform (Java 1.5+ required) and available at http://www.usadellab.org/cms/index.php?page=trimmomatic Contact: usadel@bio1.rwth-aachen.de Supplementary information: Supplementary data are available at Bioinformatics online.
            • Record: found
            • Abstract: found
            • Article: not found

            MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

            The Molecular Evolutionary Genetics Analysis (Mega) software implements many analytical methods and tools for phylogenomics and phylomedicine. Here, we report a transformation of Mega to enable cross-platform use on Microsoft Windows and Linux operating systems. Mega X does not require virtualization or emulation software and provides a uniform user experience across platforms. Mega X has additionally been upgraded to use multiple computing cores for many molecular evolutionary analyses. Mega X is available in two interfaces (graphical and command line) and can be downloaded from www.megasoftware.net free of charge.
              • Record: found
              • Abstract: found
              • Article: not found

              Prokka: rapid prokaryotic genome annotation.

              T Seemann (2014)
              The multiplex capability and high yield of current day DNA-sequencing instruments has made bacterial whole genome sequencing a routine affair. The subsequent de novo assembly of reads into contigs has been well addressed. The final step of annotating all relevant genomic features on those contigs can be achieved slowly using existing web- and email-based systems, but these are not applicable for sensitive data or integrating into computational pipelines. Here we introduce Prokka, a command line software tool to fully annotate a draft bacterial genome in about 10 min on a typical desktop computer. It produces standards-compliant output files for further analysis or viewing in genome browsers. Prokka is implemented in Perl and is freely available under an open source GPLv2 license from http://vicbioinformatics.com/. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

                Author and article information

                Contributors
                Journal
                Int J Syst Evol Microbiol
                Int J Syst Evol Microbiol
                ijsem
                ijsem
                International Journal of Systematic and Evolutionary Microbiology
                Microbiology Society
                1466-5026
                1466-5034
                2025
                23 January 2025
                23 January 2025
                : 75
                : 1
                : 006647
                Affiliations
                [1 ]departmentDepartment of Research and Innovation , MATIS , Reykjavík, Iceland
                [2 ]University of Technology of Compiègne , Compiègne, France
                [3 ]departmentFaculty of Food Science and Nutrition , University of Iceland , Reykjavík, Iceland
                [4 ]The Agricultural University of Iceland , Hvanneyri, Iceland
                Author notes

                The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

                AurélienDaussin, aurelien@ 123456matis.is

                Supplement: Three supplementary figures and five supplementary tables are available with the online version of this article

                Author information
                http://orcid.org/0009-0006-4043-4147
                Article
                006647
                10.1099/ijsem.0.006647
                11756700
                39847420
                60192a3f-7e85-48a8-823b-f1c65f243e33
                Copyright © 2025 The Authors

                This is an open-access article distributed under the terms of the Creative Commons Attribution License.

                History
                : 07 March 2024
                : 05 January 2025
                Funding
                Funded by: http://dx.doi.org/10.13039/501100011103, Rannís;
                Award ID: 174425-051
                Award Recipient :
                Categories
                Research Article
                New Taxa
                Bacteroidota

                Microbiology & Virology
                air,flavobacterium,genome,iceland,volcanic islands surstey
                Microbiology & Virology
                air, flavobacterium, genome, iceland, volcanic islands surstey

                Comments

                Comment on this article

                Related Documents Log