[1
]ISNI 0000 0001 2295 9843, GRID grid.16008.3f, Luxembourg Centre for Systems Biomedicine, , University of Luxembourg, ; Belvaux, Luxembourg
[2
]ISNI 0000 0004 0626 690X, GRID grid.419890.d, Ontario Institute for Cancer Research, ; Toronto, Canada
[3
]ISNI 0000 0001 1954 7928, GRID grid.264091.8, College of Pharmacy and Health Sciences, , St. John’s University, ; Queens, NY USA
[4
]Institut Curie, PSL Research University, Mines Paris Tech, Inserm, Paris, France
[5
]ISNI 0000 0004 1792 471X, GRID grid.434726.0, Department of Biology, , Univ. Évry, University of Paris-Saclay, Genopole, ; 91025 Évry, France
[6
]ISNI 0000 0000 9709 7726, GRID grid.225360.0, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI),
; Hinxton, UK
[7
]ISNI 0000 0004 0572 7110, GRID grid.249878.8, Institute of Data Science and Biotechnology, , Gladstone Institutes, ; San Francisco, United States
[8
]ISNI 0000 0001 0481 6099, GRID grid.5012.6, Department of Bioinformatics-BiGCaT, NUTRIM, , Maastricht University, ; Maastricht, The Netherlands
[9
]ISNI 0000 0001 0481 6099, GRID grid.5012.6, Maastricht Centre for Systems Biology, , Maastricht University, ; Maastricht, The Netherlands
[10
]ISNI 0000 0004 0483 2525, GRID grid.4567.0, Helmholtz Zentrum München, Institute of Computational Biology, ; Neuherberg, Germany
[11
]ISNI 0000000123222966, GRID grid.6936.a, Center for Mathematics, Technische Universität München, ; Garching, Germany
[12
]ISNI 0000 0001 2240 3300, GRID grid.10388.32, Faculty of Mathematics and Natural Sciences, , University of Bonn, ; Bonn, Germany
[13
]ISNI 0000 0001 0658 7699, GRID grid.9811.1, University of Konstanz, Department of Computer and Information Science, ; Konstanz, Germany
[14
]ISNI 0000 0004 1936 7857, GRID grid.1002.3, Monash University, Faculty of Information Technology, ; Melbourne, Australia
[15
]ISNI 0000 0001 2190 1447, GRID grid.10392.39, Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens,
Institute for Bioinformatics and Medical Informatics (IBMI), , University of Tübingen, ; 72076 Tübingen, Germany
[16
]ISNI 0000 0001 2190 1447, GRID grid.10392.39, Department of Computer Science, , University of Tübingen, ; 72076 Tübingen, Germany
[17
]GRID grid.452463.2, German Center for Infection Research (DZIF), partner site, ; Tübingen, Germany
[18
]ISNI 0000 0000 9758 5690, GRID grid.5288.7, Department of Molecular and Medical Genetics, School of Medicine, , Oregon Health & Science University, ; Portland, USA
[19
]ISNI 0000000121858338, GRID grid.10493.3f, Department of Systems Biology & Bioinformatics, , University of Rostock, ; Rostock, Germany
[20
]ISNI 0000 0001 2214 904X, GRID grid.11956.3a, Stellenbosch Institute of Advanced Study (STIAS), , Wallenberg Research Centre at Stellenbosch University, ; 7602 Stellenbosch, South Africa
[21
]ISNI 0000 0001 2172 2676, GRID grid.5612.0, Research Programme on Biomedical Informatics, Hospital del Mar Medical Research Institute,
Department of Experimental and Health Sciences, , Pompeu Fabra University, ; Barcelona, Spain
[22
]ISNI 0000 0000 9542 1158, GRID grid.411109.c, Clinical Bioinformatics Area, Fundación Progreso y Salud. Hosp. Virgen del Rocío,
; Sevilla, Spain
[23
]ISNI 0000 0000 9542 1158, GRID grid.411109.c, Bioinformatics in Rare Diseases. Centro de Investigación Biomédica en Red de Enfermedades
Raras, Fundación Progreso y Salud, Hosp. Virgen del Rocío, ; Sevilla, Spain
[24
]ISNI 0000 0000 9542 1158, GRID grid.411109.c, INB-ELIXIR-es, FPS, Hospital Virgen del Rocío, ; Sevilla, 42013 Spain
[25
]ISNI 0000 0000 9542 1158, GRID grid.411109.c, Institute of Biomedicine of Seville (IBIS), Hospital Virgen del Rocio, ; 41013 Sevilla, Spain
[26
]ISNI 0000 0001 2353 6535, GRID grid.428999.7, HIV, Inflammation and Persistence Unit, Virology Department, , Institut Pasteur, ; Paris, France
[27
]Dipartimento di Epidemiologia Ricerca Pre-Clinica e Diagnostica Avanzata, National
Institute for Infectious Diseases “Lazzaro Spallanzani” I.R.C.C.S., Rome, Italy
[28
]COVID 19 INMI Network Medicine for IDs Study Group, National Institute for Infectious
Diseases “Lazzaro Spallanzani” I.R.C.C.S., Rome, Italy
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]ISNI 0000 0004 0387 1602, GRID grid.10097.3f, Barcelona Supercomputer Center (BSC), ; Barcelona, Spain
[30
]ISNI 0000 0000 9601 989X, GRID grid.425902.8, Institucio Catalana de Recerca I Estudis Avançats (ICREA), ; Barcelona, Spain
[31
]ISNI 0000 0004 1936 9959, GRID grid.26091.3c, Department of Biosciences and Informatics, , Keio University, ; Yokohama, Kanagawa Japan
[32
]GRID grid.452864.9, The Systems Biology Institute, ; Shinagawa, Tokyo Japan
[33
]ISNI 0000 0000 9805 2626, GRID grid.250464.1, Okinawa Institute of Science and Technology Graduate University, ; Kunigami, Okinawa Japan
[34
]ISNI 0000 0004 1764 0071, GRID grid.452725.3, Sony Computer Science Laboratories, Inc., ; Tokyo, Japan
[35
]European Institute for Systems Biology and Medicine (EISBM), Vourles, France
[36
]Bio Sorbonne Paris Cité, Université de Paris, Paris, France
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