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      Evolution of nuchal glands, unusual defensive organs of Asian natricine snakes (Serpentes: Colubridae), inferred from a molecular phylogeny

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          Abstract

          A large body of evidence indicates that evolutionary innovations of novel organs have facilitated the subsequent diversification of species. Investigation of the evolutionary history of such organs should provide important clues for understanding the basis for species diversification. An Asian natricine snake, Rhabdophis tigrinus, possesses a series of unusual organs, called nuchal glands, which contain cardiotonic steroid toxins known as bufadienolides. Rhabdophis tigrinus sequesters bufadienolides from its toad prey and stores them in the nuchal glands as a defensive mechanism. Among more than 3,500 species of snakes, only 17 Asian natricine species are known to possess nuchal glands or their homologues. These 17 species belong to three nominal genera, Balanophis, Macropisthodon, and Rhabdophis. In Macropisthodon and Rhabdophis, however, species without nuchal glands also exist. To infer the evolutionary history of the nuchal glands, we investigated the molecular phylogenetic relationships among Asian natricine species with and without nuchal glands, based on variations in partial sequences of Mt‐ CYB, Cmos, and RAG1 (total 2,767 bp). Results show that all species with nuchal glands belong to a single clade ( NGC). Therefore, we infer that the common ancestor of this clade possessed nuchal glands with no independent origins of the glands within the members. Our results also imply that some species have secondarily lost the glands. Given the estimated divergence time of related species, the ancestor of the nuchal gland clade emerged 19.18 mya. Our study shows that nuchal glands are fruitful subjects for exploring the evolution of novel organs. In addition, our analysis indicates that reevaluation of the taxonomic status of the genera Balanophis and Macropisthodon is required. We propose to assign all species belonging to the NGC to the genus Rhabdophis, pending further study.

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          Most cited references29

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          Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene.

          The single-copy RAG-1 gene is found throughout higher vertebrates and consists of a single 3.1-kb exon without intervening introns. A 2.9-kb region of the RAG-1 locus was sequenced for 14 basal taxa of birds plus the crocodylian outgroups Alligator and Gavialis. Phylogenetic analysis of the sequences supported the hypothesis that the deepest evolutionary split in extant birds separates paleognaths from neognaths. A deep division among neognaths separates the chicken- and duck-like birds ("galloanserines") from a clade consisting of all other birds ("plethornithines"). The relationships of these three basal clades in Aves were supported by high bootstrap (98 to 100%) and large decay index values (above 14). Additionally, the plethornithine clade is characterized by a 15-bp (five-codon) synapomorphic deletion relative to all other birds. RAG-1 evolves slowly, with a number of properties favoring its phylogenetic utility, including rarity of indels, minimal saturation of transition changes at 3rd positions of codons, nearly constant base composition across taxa, and no asymmetry in directional patterns of reconstructed change. However, RAG-1 does not evolve in a clocklike manner, suggesting that this gene cannot easily be used for estimating ages of ancient lineages. Copyright 1999 Academic Press.
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            Evolutionary novelties.

            How novel traits arise in organisms has long been a major problem in biology. Indeed, the sharpest critiques of Darwin's theory of evolution by natural selection often centered on explaining how novel body parts arose. In his response to The Origin of Species, St. George J. Mivart challenged Darwin to explain the origin of evolutionary novelties such as the mammary gland, asking if it was "conceivable that the young of any animal was ever saved from destruction by accidentally sucking a drop of scarcely nutritious fluid from an accidentally hypertrophied cutaneous gland of its mother?" It is only now that modern molecular and genomic tools are being brought to bear on this question that we are finally in a position to answer Mivart's challenge and explain one of the most fundamental questions of biology: how does novelty arise in evolution? Copyright 2010 Elsevier Ltd. All rights reserved.
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              Phylogeny of the Colubroidea (Serpentes): new evidence from mitochondrial and nuclear genes.

              The Colubroidea contains over 85% of all the extant species of snakes and is recognized as monophyletic based on morphological and molecular data. Using DNA sequences (cyt b, c-mos) from 100 species we inferred the phylogeny of colubroids with special reference to the largest family, the Colubridae. Tree inference was obtained using Bayesian, likelihood, and parsimony methods. All analyses produced five major groups, the Pareatidae, Viperidae, Homalopsidae, the Elapidae, and the Colubridae. The specific content of the latter two groups has been altered to accommodate evolutionary history and to yield a more stable taxonomy. We propose an updated classification based on the reallocation of species as indicated by our inferred phylogeny.
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                Author and article information

                Contributors
                gappa@ethol.zool.kyoto-u.ac.jp
                Journal
                Ecol Evol
                Ecol Evol
                10.1002/(ISSN)2045-7758
                ECE3
                Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2045-7758
                21 September 2018
                October 2018
                : 8
                : 20 ( doiID: 10.1002/ece3.2018.8.issue-20 )
                : 10219-10232
                Affiliations
                [ 1 ] Seto Marine Biological Laboratory Field Science Education and Research Center Kyoto University Shirahama Japan
                [ 2 ] Department of Biology Utah State University Logan Utah
                [ 3 ] Chengdu Institute of Biology Chinese Academy of Sciences Chengdu China
                [ 4 ] Gampola Sri Lanka
                [ 5 ] Institute of Biodiversity and Environmental Conservation University Malaysia Sarawak Sarawak Malaysia
                [ 6 ] Vietnam National Museum of Nature Vietnam Academy of Science and Technology Hanoi Vietnam
                [ 7 ] Graduate University of Science and Technology Vietnam Academy of Science and Technology Hanoi Vietnam
                [ 8 ] Department of Biological Science and Technology National Pingtung University of Science and Technology Neipu Township Taiwan
                [ 9 ] College of Life Science Sichuan Agricultural University Ya'an China
                [ 10 ] University of Sri Jayewardenepura Nugegoda Sri Lanka
                [ 11 ] Department of Zoology Graduate School of Science Kyoto University Kyoto Japan
                [ 12 ]Present address: College of Bioresource Science Nihon University Fujisawa Kanagawa Japan
                [ 13 ]Present address: Tropical Biosphere Research Center University of the Ryukyus Nishihara Okinawa Japan
                Author notes
                [*] [* ] Correspondence

                Akira Mori, Department of Zoology, Graduate School of Science, Kyoto University, Kyoto, Japan.

                Email: gappa@ 123456ethol.zool.kyoto-u.ac.jp

                Author information
                http://orcid.org/0000-0002-3153-4342
                Article
                ECE34497
                10.1002/ece3.4497
                6206205
                30397460
                61bebe74-62f6-43ba-be79-0523ddc371ec
                © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 10 November 2017
                : 22 June 2018
                : 24 July 2018
                Page count
                Figures: 3, Tables: 1, Pages: 14, Words: 8828
                Funding
                Funded by: Japan Society for the Promotion of Science
                Award ID: 16J06675
                Award ID: 17H03719
                Award ID: 26440213
                Funded by: National Natural Science Foundation of China
                Award ID: 31401959
                Award ID: 31450110454
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                ece34497
                October 2018
                Converter:WILEY_ML3GV2_TO_NLMPMC version:version=5.5.1 mode:remove_FC converted:30.10.2018

                Evolutionary Biology
                balanophis,macropisthodon,molecular phylogenetics,natricinae,nuchal glands,rhabdophis

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