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      Characterization of LysBC17, a Lytic Endopeptidase from Bacillus cereus

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          Abstract

          Bacillus cereus, a Gram-positive bacterium, is an agent of food poisoning. B. cereus is closely related to Bacillus anthracis, a deadly pathogen for humans, and Bacillus thuringenesis, an insect pathogen. Due to the growing prevalence of antibiotic resistance in bacteria, alternative antimicrobials are needed. One such alternative is peptidoglycan hydrolase enzymes, which can lyse Gram-positive bacteria when exposed externally. A bioinformatic search for bacteriolytic enzymes led to the discovery of a gene encoding an endolysin-like endopeptidase, LysBC17, which was then cloned from the genome of B. cereus strain Bc17. This gene is also present in the B. cereus ATCC 14579 genome. The gene for LysBC17 encodes a protein of 281 amino acids. Recombinant LysBC17 was expressed and purified from E. coli. Optimal lytic activity against B. cereus occurred between pH 7.0 and 8.0, and in the absence of NaCl. The LysBC17 enzyme had lytic activity against strains of B. cereus, B. anthracis, and other Bacillus species.

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          Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the GenBank® nucleic acid sequence database and the PubMed database of citations and abstracts for published life science journals. The Entrez system provides search and retrieval operations for most of these data from 39 distinct databases. The E-utilities serve as the programming interface for the Entrez system. Augmenting many of the Web applications are custom implementations of the BLAST program optimized to search specialized data sets. New resources released in the past year include PubMed Data Management, RefSeq Functional Elements, genome data download, variation services API, Magic-BLAST, QuickBLASTp, and Identical Protein Groups. Resources that were updated in the past year include the genome data viewer, a human genome resources page, Gene, virus variation, OSIRIS, and PubChem. All of these resources can be accessed through the NCBI home page at www.ncbi.nlm.nih.gov.
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              Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis.

              Bacillus cereus is an opportunistic pathogen causing food poisoning manifested by diarrhoeal or emetic syndromes. It is closely related to the animal and human pathogen Bacillus anthracis and the insect pathogen Bacillus thuringiensis, the former being used as a biological weapon and the latter as a pesticide. B. anthracis and B. thuringiensis are readily distinguished from B. cereus by the presence of plasmid-borne specific toxins (B. anthracis and B. thuringiensis) and capsule (B. anthracis). But phylogenetic studies based on the analysis of chromosomal genes bring controversial results, and it is unclear whether B. cereus, B. anthracis and B. thuringiensis are varieties of the same species or different species. Here we report the sequencing and analysis of the type strain B. cereus ATCC 14579. The complete genome sequence of B. cereus ATCC 14579 together with the gapped genome of B. anthracis A2012 enables us to perform comparative analysis, and hence to identify the genes that are conserved between B. cereus and B. anthracis, and the genes that are unique for each species. We use the former to clarify the phylogeny of the cereus group, and the latter to determine plasmid-independent species-specific markers.
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                Author and article information

                Journal
                Antibiotics (Basel)
                Antibiotics (Basel)
                antibiotics
                Antibiotics
                MDPI
                2079-6382
                19 September 2019
                September 2019
                : 8
                : 3
                : 155
                Affiliations
                [1 ]USDA, Agricultural Research Service, BARC, Animal Biosciences and Biotechnology Laboratory, Baltimore Ave., Beltsville, MD 10300, USA; steven.swift.phd@ 123456gmail.com (S.M.S.); kreid414@ 123456gmail.com (K.P.R.); renovatebio.jerelwaters@ 123456gmail.com (J.J.W.); ddonovan0@ 123456yahoo.com (D.M.D.)
                [2 ]ContraFect Corporation, Yonkers, NY 10701, USA
                [3 ]Institute for Bioscience and Biotechnology Research, Rockville, MD 20850, USA; irina.v.etobayeva.mil@ 123456mail.mil
                [4 ]Department of Veterinary Medicine, University of Maryland, College Park, MD 20742, USA
                [5 ]RenOVAte Biosciences Inc., Reisterstown, MD 21136, USA
                [6 ]College of Veterinary Medicine, Western University of Health Sciences, Pomona, CA 91766, USA; boakley@ 123456westernu.edu
                Author notes
                [* ]Correspondence: nelsond@ 123456umd.edu ; Tel.: +1-240-314-6249
                Author information
                https://orcid.org/0000-0001-6896-2052
                https://orcid.org/0000-0003-3248-4831
                Article
                antibiotics-08-00155
                10.3390/antibiotics8030155
                6784087
                31546935
                62a0bb91-5ada-45ec-9a84-dce2c03dd34b
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 27 August 2019
                : 17 September 2019
                Categories
                Article

                peptidoglycan hydrolase,endopeptidase,endolysin,autolysin,bacillus cereus,bacillus anthracis

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