Contributors
Soo Ching Lee: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: Project administrationRole: VisualizationRole: Writing – original
draftRole: Writing – review & editing
Mei San Tang: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole:
MethodologyRole: ValidationRole: VisualizationRole: Writing – original draftRole:
Writing – review & editing
Alice V. Easton:
ORCID: http://orcid.org/0000-0002-4476-9415
Role: Data curationRole: Formal analysisRole: MethodologyRole: ValidationRole: VisualizationRole:
Writing – review & editing
Joseph Cooper Devlin: Role: Formal analysisRole: Visualization
Ling Ling Chua:
ORCID: http://orcid.org/0000-0002-1315-9489
Role: Investigation
Ilseung Cho:
ORCID: http://orcid.org/0000-0002-7308-8707
Role: Funding acquisition
Foong Ming Moy:
ORCID: http://orcid.org/0000-0002-0306-4419
Role: Investigation
Tsung Fei Khang:
ORCID: http://orcid.org/0000-0003-4433-9738
Role: Writing – review & editing
Yvonne A. L. Lim: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole:
ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review
& editing
P’ng Loke: Role: ConceptualizationRole: Data curationRole: Formal analysisRole: Funding acquisitionRole:
InvestigationRole: MethodologyRole: Project administrationRole: ResourcesRole: SupervisionRole:
ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review
& editing
Makedonka Mitreva: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Pathog
Journal ID (iso-abbrev): PLoS Pathog
Journal ID (publisher-id): plos
Journal ID (pmc): plospath
Title:
PLoS Pathogens
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-7366
ISSN
(Electronic):
1553-7374
Publication date
(Electronic):
16
December
2019
Publication date Collection:
December
2019
Volume: 15
Issue: 12
Electronic Location Identifier: e1008066
Affiliations
[1
]
Department of Parasitology, Faculty of Medicine, University of Malaya, Kuala Lumpur,
Malaysia
[2
]
Centre of Excellence for Research in AIDS (CERiA), University of Malaya, Kuala Lumpur,
Malaysia
[3
]
Department of Microbiology, New York University School of Medicine, New York, New
York, United States of America
[4
]
Department of Obstetrics and Gynecology, Faculty of Medicine, University of Malaya
Medical Centre, Kuala Lumpur, Malaysia
[5
]
Department of Paediatrics, Faculty of Medicine, University of Malaya Medical Centre,
Kuala Lumpur, Malaysia
[6
]
Department of Medicine, Division of Gastroenterology, New York University School of
Medicine, New York, New York, United States of America
[7
]
Department of Social and Preventive Medicine, Faculty of Medicine, University of Malaya,
Kuala Lumpur, Malaysia
[8
]
University of Malaya Centre for Data Analytics, University of Malaya, Kuala Lumpur,
Malaysia
[9
]
Institute of Mathematical Sciences, Faculty of Science, University of Malaya, Kuala
Lumpur, Malaysia
Washington University School of Medicine, UNITED STATES
Author notes
The authors have declared that no competing interests exist.
[¤]
Current address: Department of Pathology & Immunology, Washington University School
of Medicine in St. Louis, St. Louis, Missouri, United States of America
Author information
Article
Publisher ID:
PPATHOGENS-D-19-00594
DOI: 10.1371/journal.ppat.1008066
PMC ID: 6913942
PubMed ID: 31841569
SO-VID: 62cf7fc7-6883-41af-ad89-45055ed081db
Copyright © © 2019 Lee et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 28
March
2019
Date
accepted
: 3
September
2019
Page count
Figures: 8,
Tables: 0,
Pages: 30
Funding
Funded by: Ministry of Higher Education Malaysia under Fundamental Research Grant Scheme
Award ID: grant FP004-2017A
Award Recipient
:
Yvonne A. L. Lim
Funded by: funder-id http://dx.doi.org/10.13039/501100004386, Universiti Malaya;
Award ID: BKS005-2017
Award Recipient
:
Yvonne A. L. Lim
Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
Award ID: AI093811
Award Recipient
:
P’ng Loke
Funded by: funder-id http://dx.doi.org/10.13039/100000060, National Institute of Allergy and Infectious Diseases;
Award ID: AI094166
Award Recipient
:
P’ng Loke
Funded by: funder-id http://dx.doi.org/10.13039/100000062, National Institute of Diabetes and Digestive and Kidney Diseases;
Award ID: DK103788
Award Recipient
:
P’ng Loke
Funded by: funder-id http://dx.doi.org/10.13039/100000862, Doris Duke Charitable Foundation;
Award Recipient
:
ORCID: http://orcid.org/0000-0002-7308-8707
Ilseung Cho
NYU Langone's Genome Technology Center (GTC) is part of an institution-shared resource
partially supported by the Cancer Center (support grant P30CA016087) at the Laura
and Isaac Perlmutter Cancer Center. We also thank the NYU IT High Performance Computing
resources, services, and staff expertise. This work was supported by the NIH NIAID
(grants AI093811 and AI094166 to P.L.), NIDDK (grant DK103788 to P.L.), Vilcek Foundation
(M.S.T.), AAI (M.S.T.), University of Malaya/Ministry of Higher Education Malaysia
High Impact Research (grant UM.C/625/HIR/MOE/MED/23 to Y.A.L.L. and P.L), University
of Malaya (grant BKS005-2017 to Y.A.L.L.), Ministry of Higher Education Malaysia under
Fundamental Research Grant Scheme (grant FP004-2017A to Y.A.L.L. and S.C.L.), Doris
Duke (I.C.). The funders had no role in study design, data collection and analysis,
decision to publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Anatomy
Subject:
Body Fluids
Subject:
Blood
Subject:
Medicine and Health Sciences
Subject:
Anatomy
Subject:
Body Fluids
Subject:
Blood
Subject:
Biology and Life Sciences
Subject:
Physiology
Subject:
Body Fluids
Subject:
Blood
Subject:
Medicine and Health Sciences
Subject:
Physiology
Subject:
Body Fluids
Subject:
Blood
Subject:
Medicine and Health Sciences
Subject:
Parasitic Diseases
Subject:
Helminth Infections
Subject:
Physical Sciences
Subject:
Chemistry
Subject:
Chemical Elements
Subject:
Zinc
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Gene Expression
Subject:
Gene Regulation
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Medical Microbiology
Subject:
Microbiome
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Microbial Genomics
Subject:
Microbiome
Subject:
Biology and Life Sciences
Subject:
Microbiology
Subject:
Microbial Genomics
Subject:
Microbiome
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Eukaryota
Subject:
Animals
Subject:
Invertebrates
Subject:
Helminths
Subject:
Biology and Life Sciences
Subject:
Organisms
Subject:
Bacteria
Subject:
Gut Bacteria
Subject:
Research and Analysis Methods
Subject:
Mathematical and Statistical Techniques
Subject:
Statistical Methods
Subject:
Multivariate Analysis
Subject:
Principal Component Analysis
Subject:
Physical Sciences
Subject:
Mathematics
Subject:
Statistics
Subject:
Statistical Methods
Subject:
Multivariate Analysis
Subject:
Principal Component Analysis
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