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      Assessment for the timing of comprehensive genomic profiling tests in patients with advanced solid cancers

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          Abstract

          Comprehensive genomic profiling (CGP) tests have been covered by public insurance in Japan for patients with advanced solid tumors who have completed or are completing standard treatments or do not have them. Therefore, genotype‐matched drug candidates are often unapproved or off‐label, and improving clinical trial access is critical, involving the appropriate timing of CGP tests. To address this issue, we analyzed the previous treatment data for 441 patients from an observational study on CGP tests discussed by the expert panel at Hokkaido University Hospital between August 2019 and May 2021. The median number of previous treatment lines was two; three or more lines accounted for 49%. Information on genotype‐matched therapies was provided to 277 (63%). Genotype‐matched clinical trials were ineligible because of an excess number of previous treatment lines or use of specific agents were found in 66 (15%) patients, with the highest proportion in breast and prostate cancers. Many patients met the exclusion criteria of one to two or more treatment lines across cancer types. In addition, previous use of specific agents was a frequent exclusion criterion for breast, prostate, colorectal, and ovarian cancers. The patients with tumor types with a low median number (two or fewer) of previous treatment lines, including most rare cancers, primary unknown cancers, and pancreatic cancers, had significantly fewer ineligible clinical trials. The earlier timing of CGP tests may improve access to genotype‐matched clinical trials, with their proportion varying by cancer type. Each relevant society needs to advocate the desirable timing of CGP testing nationwide.

          Abstract

          The present study suggests that earlier timing of CGP tests improves access to genotype‐matched clinical trials, with their proportion varying by cancer type. It may be desirable to perform CGP tests at earlier lines of chemotherapy or before using specific therapeutic agents for some cancer types. As in the case of colorectal cancer, each relevant society needs to advocate the desirable timing of CGP testing for a specific cancer type nationwide.

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          Most cited references21

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          Mutational Landscape of Metastatic Cancer Revealed from Prospective Clinical Sequencing of 10,000 Patients

          Tumor molecular profiling is a fundamental component of precision oncology, enabling the identification of genomic alterations in genes and pathways that can be targeted therapeutically. The existence of recurrent targetable alterations across distinct histologically-defined tumor types, coupled with an expanding portfolio of molecularly-targeted therapies, demands flexible and comprehensive approaches to profile clinically significant genes across the full spectrum of cancers. We established a large-scale, prospective clinical sequencing initiative utilizing a comprehensive assay, MSK-IMPACT, through which we have compiled matched tumor and normal sequence data from a unique cohort of more than 10,000 patients with advanced cancer and available pathological and clinical annotations. Using these data, we identified clinically relevant somatic mutations, novel non-coding alterations, and mutational signatures that were shared among common and rare tumor types. Patients were enrolled on genomically matched clinical trials at a rate of 11%. To enable discovery of novel biomarkers and deeper investigation into rare alterations and tumor types, all results are publicly accessible.
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            Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications.

            The purpose of this study was to classify breast carcinomas based on variations in gene expression patterns derived from cDNA microarrays and to correlate tumor characteristics to clinical outcome. A total of 85 cDNA microarray experiments representing 78 cancers, three fibroadenomas, and four normal breast tissues were analyzed by hierarchical clustering. As reported previously, the cancers could be classified into a basal epithelial-like group, an ERBB2-overexpressing group and a normal breast-like group based on variations in gene expression. A novel finding was that the previously characterized luminal epithelial/estrogen receptor-positive group could be divided into at least two subgroups, each with a distinctive expression profile. These subtypes proved to be reasonably robust by clustering using two different gene sets: first, a set of 456 cDNA clones previously selected to reflect intrinsic properties of the tumors and, second, a gene set that highly correlated with patient outcome. Survival analyses on a subcohort of patients with locally advanced breast cancer uniformly treated in a prospective study showed significantly different outcomes for the patients belonging to the various groups, including a poor prognosis for the basal-like subtype and a significant difference in outcome for the two estrogen receptor-positive groups.
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              Pemigatinib for previously treated, locally advanced or metastatic cholangiocarcinoma: a multicentre, open-label, phase 2 study

              Fibroblast growth factor receptor (FGFR) 2 gene alterations are involved in the pathogenesis of cholangiocarcinoma. Pemigatinib is a selective, potent, oral inhibitor of FGFR1, 2, and 3. This study evaluated the safety and antitumour activity of pemigatinib in patients with previously treated, locally advanced or metastatic cholangiocarcinoma with and without FGFR2 fusions or rearrangements.

                Author and article information

                Contributors
                kinoshii@med.hokudai.ac.jp
                Journal
                Cancer Sci
                Cancer Sci
                10.1111/(ISSN)1349-7006
                CAS
                Cancer Science
                John Wiley and Sons Inc. (Hoboken )
                1347-9032
                1349-7006
                19 May 2023
                August 2023
                : 114
                : 8 ( doiID: 10.1111/cas.v114.8 )
                : 3385-3395
                Affiliations
                [ 1 ] Division of Clinical Cancer Genomics Hokkaido University Hospital Hokkaido Japan
                [ 2 ] Department of Breast Surgery Hokkaido University Hospital Hokkaido Japan
                [ 3 ] Department of Medical Oncology Sapporo Medical University School of Medicine Hokkaido Japan
                [ 4 ] Genetic Oncology Department Asahikawa Medical University Hospital Hokkaido Japan
                [ 5 ] Department of Pediatrics Hokkaido University Hospital Hokkaido Japan
                [ 6 ] Department of Medical Oncology Hokkaido University Hospital Hokkaido Japan
                [ 7 ] Department of Gastroenterology and Hepatology Hokkaido University Hospital Hokkaido Japan
                [ 8 ] Department of Cancer Chemotherapy Hokkaido University Hospital, Cancer Center Hokkaido Japan
                [ 9 ] Department of Renal and Genitourinary surgery Hokkaido University Hospital Hokkaido Japan
                [ 10 ] Center for Development of Advanced Diagnostics Hokkaido University Hospital Hokkaido Japan
                [ 11 ] Division of Clinical Genetics Hokkaido University Hospital Hokkaido Japan
                [ 12 ] Department of Surgical Pathology Hokkaido University Hospital Hokkaido Japan
                [ 13 ] Department of Medical Genetics and Genomics Sapporo Medical University Hokkaido Japan
                [ 14 ] Department of Medical Oncology Teine Keijinkai Hospital Hokkaido Japan
                [ 15 ] Center for Clinical Cancer Genomics and Precision Medicine, NHO Hokkaido Cancer Center Hokkaido Japan
                [ 16 ] Department of Gastroenterology Hakodate Municipal Hospital Hokkaido Japan
                Author notes
                [*] [* ] Correspondence

                Ichiro Kinoshita, Division of Clinical Cancer Genomics, Hokkaido University Hospital, N15W7, Kita‐ku, Sapporo 060‐8638, Japan.

                Email: kinoshii@ 123456med.hokudai.ac.jp

                Author information
                https://orcid.org/0000-0002-4279-0317
                https://orcid.org/0000-0002-1570-6802
                https://orcid.org/0000-0003-4444-7958
                https://orcid.org/0000-0002-2287-023X
                https://orcid.org/0000-0002-6641-9598
                https://orcid.org/0000-0002-1068-7024
                Article
                CAS15837 CAS-OA-2911-2022.R1
                10.1111/cas.15837
                10394138
                37208840
                63d6c62a-8319-4489-98db-4ae44ed92826
                © 2023 The Authors. Cancer Science published by John Wiley & Sons Australia, Ltd on behalf of Japanese Cancer Association.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.

                History
                : 07 April 2023
                : 04 January 2023
                : 20 April 2023
                Page count
                Figures: 5, Tables: 5, Pages: 11, Words: 6529
                Categories
                Original Article
                ORIGINAL ARTICLES
                Genetics, Genomics and Proteomics
                Custom metadata
                2.0
                August 2023
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.3.2 mode:remove_FC converted:02.08.2023

                Oncology & Radiotherapy
                advanced solid tumors,clinical trials,comprehensive genomic profiling tests,genotype‐matched therapy,treatment lines

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