15
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Microbial and Geochemical Dynamics of an Aquifer Stimulated for Microbial Induced Calcite Precipitation (MICP)

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Microbially induced calcite precipitation (MICP) is an alternative to existing soil stabilization techniques for construction and erosion. As with any biologically induced process in soils or aquifers, it is important to track changes in the microbial communities that occur as a result of the treatment. Our research assessed how native microbial communities developed in response to injections of reactants (dilute molasses as a carbon source; urea as a source of nitrogen and alkalinity) that promoted MICP in a shallow aquifer. Microbial community composition (16S rRNA gene) and ureolytic potential ( ureC gene copy numbers) were also measured in groundwater and artificial sediment. Aquifer geochemistry showed evidence of sulfate reduction, nitrification, denitrification, ureolysis, and iron reduction during the treatment. The observed changes in geochemistry corresponded to microbial community succession in the groundwater and this matched parallel geophysical and mineralogical evidence of calcite precipitation in the aquifer. We detected an increase in the number of ureC genes in the microbial communities at the end of the injection period, suggesting an increase in the abundance of microbes possessing this gene as needed to hydrolyze urea and stimulate MICP. We identify geochemical and biological markers that highlight the microbial community response that can be used along with geophysical and geotechnical evidence to assess progress of MICP.

          Related collections

          Most cited references51

          • Record: found
          • Abstract: found
          • Article: not found

          Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.

          The ongoing revolution in high-throughput sequencing continues to democratize the ability of small groups of investigators to map the microbial component of the biosphere. In particular, the coevolution of new sequencing platforms and new software tools allows data acquisition and analysis on an unprecedented scale. Here we report the next stage in this coevolutionary arms race, using the Illumina GAIIx platform to sequence a diverse array of 25 environmental samples and three known "mock communities" at a depth averaging 3.1 million reads per sample. We demonstrate excellent consistency in taxonomic recovery and recapture diversity patterns that were previously reported on the basis of metaanalysis of many studies from the literature (notably, the saline/nonsaline split in environmental samples and the split between host-associated and free-living communities). We also demonstrate that 2,000 Illumina single-end reads are sufficient to recapture the same relationships among samples that we observe with the full dataset. The results thus open up the possibility of conducting large-scale studies analyzing thousands of samples simultaneously to survey microbial communities at an unprecedented spatial and temporal resolution.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Microbial biogeography: putting microorganisms on the map.

            We review the biogeography of microorganisms in light of the biogeography of macroorganisms. A large body of research supports the idea that free-living microbial taxa exhibit biogeographic patterns. Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity. However, recent studies also dispute the idea that 'everything is everywhere'. We also consider how the processes that generate and maintain biogeographic patterns in macroorganisms could operate in the microbial world.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Interactions and self-organization in the soil-microbe complex.

              Soil is the most complicated biomaterial on the planet. As with any material, the physical habitat is of prime importance in determining and regulating biological activity. However, until recently the opaque nature of soil has meant that any interrogation of its interior architecture has been relatively rudimentary, restricted to simple qualitative expressions of the physical heterogeneity that fail to relate to any specific function. However, new techniques and insights into the biophysical and biochemical processes of this inner space are leading to the developments of theoretical frameworks and experimental approaches that will allow us to sustainably manage Earth's most important resource. We introduce the concept that the soil-microbe system is self-organized and suggest new priorities for research based on an integrative approach that combines biochemistry and biophysics.
                Bookmark

                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                16 June 2020
                2020
                : 11
                : 1327
                Affiliations
                [1] 1Department of Microbiology, Oregon State University , Corvallis, OR, United States
                [2] 2Bioscience Division, Los Alamos National Laboratory , Los Alamos, NM, United States
                [3] 3Department of Earth & Environmental Sciences, Rutgers University , Newark, NJ, United States
                [4] 4College of Engineering, Georgia Institute of Technology , Atlanta, GA, United States
                [5] 5College of Earth, Ocean, and Atmospheric Sciences, Oregon State University , Corvallis, OR, United States
                Author notes

                Edited by: Shan Yi, The University of Auckland, New Zealand

                Reviewed by: Patricia M. Valdespino-Castillo, Lawrence Berkeley National Laboratory, United States; Aqiang Ding, Chongqing University, China

                *Correspondence: Frederick S. Colwell, rcolwell@ 123456coas.oregonstate.edu

                This article was submitted to Microbiotechnology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2020.01327
                7309221
                64453868-825f-4ea6-a8e9-b98189e1ae02
                Copyright © 2020 Ohan, Saneiyan, Lee, Bartlow, Ntarlagiannis, Burns and Colwell.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 28 January 2020
                : 25 May 2020
                Page count
                Figures: 4, Tables: 4, Equations: 1, References: 66, Pages: 15, Words: 0
                Funding
                Funded by: National Science Foundation 10.13039/100000001
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                microbial induced calcite precipitation (micp),biomineralization,biocementation,biostimulation,soil stabilization

                Comments

                Comment on this article