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      Evolutionary Divergence in DNA Damage Responses among Fungi

      article-commentary
      a ,
      mBio
      American Society for Microbiology
      cell cycle, DNA damage, DNA repair, budding yeasts, Saccharomycotina

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          Abstract

          Cell cycle checkpoints and DNA repair pathways contribute to maintaining genome integrity and are thought to be evolutionarily ancient and broadly conserved. For example, in the yeast Saccharomyces cerevisiae and humans, DNA damage induces activation of a checkpoint effector kinase, Rad53p (human homolog Chk2), to promote cell cycle arrest and transcription of DNA repair genes.

          ABSTRACT

          Cell cycle checkpoints and DNA repair pathways contribute to maintaining genome integrity and are thought to be evolutionarily ancient and broadly conserved. For example, in the yeast Saccharomyces cerevisiae and humans, DNA damage induces activation of a checkpoint effector kinase, Rad53p (human homolog Chk2), to promote cell cycle arrest and transcription of DNA repair genes. However, recent studies have revealed variation in the DNA damage response networks of some fungi. For example, Shor et al. (mBio 11:e03044-20, 2020, https://doi.org/10.1128/mBio.03044-20) demonstrate that in comparison to S. cerevisiae, the fungal pathogen Candida glabrata has reduced activation of Rad53p in response to DNA damage. Consequently, some downstream targets that contribute to S. cerevisiae genome maintenance, such as DNA polymerases, are transcriptionally downregulated in C. glabrata. Downregulation of genome maintenance genes likely contributes to higher rates of mitotic failure and cell death in C. glabrata. This and other recent findings highlight evolutionary diversity in eukaryotic DNA damage responses.

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          Cell cycle checkpoints: preventing an identity crisis.

          Cell cycle checkpoints are regulatory pathways that control the order and timing of cell cycle transitions and ensure that critical events such as DNA replication and chromosome segregation are completed with high fidelity. In addition, checkpoints respond to damage by arresting the cell cycle to provide time for repair and by inducing transcription of genes that facilitate repair. Checkpoint loss results in genomic instability and has been implicated in the evolution of normal cells into cancer cells. Recent advances have revealed signal transduction pathways that transmit checkpoint signals in response to DNA damage, replication blocks, and spindle damage. Checkpoint pathways have components shared among all eukaryotes, underscoring the conservation of cell cycle regulatory machinery.
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            Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

            Budding yeasts (subphylum Saccharomycotina) are found in every biome and are as genetically diverse as plants or animals. To understand budding yeast evolution, we analyzed the genomes of 332 yeast species, including 220 newly sequenced ones, which represent nearly a third of all known budding yeast diversity. Here we establish a robust genus-level phylogeny comprised of 12 major clades, infer the timescale of diversification from the Devonian Period to the present, quantify horizontal gene transfer (HGT), and reconstruct the evolution of 45 metabolic traits and the metabolic toolkit of the Budding Yeast Common Ancestor (BYCA). We infer that BYCA was metabolically complex and chronicle the tempo and mode of genomic and phenotypic evolution across the subphylum, which is characterized by very low HGT levels and widespread losses of traits and the genes that control them. More generally, our results argue that reductive evolution is a major mode of evolutionary diversification. An integrated phylogeny of over 300 budding yeast species encompasses the natural diversity and history of diversification of Saccharomycotina with insights into a metabolically-complex common ancestor and common reductive evolution leading to metabolic specialization.
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              Cell cycle regulation by checkpoints.

              Cell cycle checkpoints are surveillance mechanisms that monitor the order, integrity, and fidelity of the major events of the cell cycle. These include growth to the appropriate cell size, the replication and integrity of the chromosomes, and their accurate segregation at mitosis. Many of these mechanisms are ancient in origin and highly conserved, and hence have been heavily informed by studies in simple organisms such as the yeasts. Others have evolved in higher organisms, and control alternative cell fates with significant impact on tumor suppression. Here, we consider these different checkpoint pathways and the consequences of their dysfunction on cell fate.
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                Author and article information

                Journal
                mBio
                mBio
                mbio
                mbio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                16 March 2021
                Mar-Apr 2021
                : 12
                : 2
                : e03348-20
                Affiliations
                [a ]Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, USA
                Author notes
                Address correspondence to jacob.steenwyk@ 123456vanderbilt.edu .
                Author information
                https://orcid.org/0000-0002-8436-595X
                Article
                mBio03348-20
                10.1128/mBio.03348-20
                8092291
                33727357
                654f312d-dff3-4f37-87be-1825ab6e3ecd
                Copyright © 2021 Steenwyk.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Page count
                supplementary-material: 0, Figures: 1, Tables: 0, Equations: 0, References: 34, Pages: 4, Words: 2521
                Funding
                Funded by: Howard Hughes Medical Institute (HHMI), https://doi.org/10.13039/100000011;
                Award ID: James H. Gilliam Fellowships
                Award Recipient :
                Categories
                Commentary
                Custom metadata
                March/April 2021

                Life sciences
                cell cycle,dna damage,dna repair,budding yeasts,saccharomycotina
                Life sciences
                cell cycle, dna damage, dna repair, budding yeasts, saccharomycotina

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