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      Enhanced neuronal RNAi in C. elegans using SID-1

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          SUMMARY

          We expressed SID-1, a transmembrane protein from Caenorhabditis elegans that is required for systemic RNAi, in C. elegans neurons. This expression increased the response of neurons to dsRNA delivered by feeding. Mutations in the lin-15b and lin-35 genes further enhanced this effect. Worms expressing neuronal SID-1 showed RNAi phenotypes for known neuronal genes and for uncharacterized genes with no previously known neuronal phenotypes. Neuronal expression of sid-1 decreased non-neuronal RNAi, suggesting that neurons expressing transgenic sid-1(+) served as a sink for dsRNA. This effect, or a sid-1(−) background, can be used to uncover neuronal defects for lethal genes. Expression of sid-1(+) from cell-specific promoters in sid-1 mutants results in cell-specific feeding RNAi. We used these strains to identify a role for integrin signaling genes in mechanosensation.

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          Most cited references25

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          Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences.

          We describe a dominant behavioral marker, rol-6(su-1006), and an efficient microinjection procedure which facilitate the recovery of Caenorhabditis elegans transformants. We use these tools to study the mechanism of C.elegans DNA transformation. By injecting mixtures of genetically marked DNA molecules, we show that large extrachromosomal arrays assemble directly from the injected molecules and that homologous recombination drives array assembly. Appropriately placed double-strand breaks stimulated homologous recombination during array formation. Our data indicate that the size of the assembled transgenic structures determines whether or not they will be maintained extrachromosomally or lost. We show that low copy number extrachromosomal transformation can be achieved by adjusting the relative concentration of DNA molecules in the injection mixture. Integration of the injected DNA, though relatively rare, was reproducibly achieved when single-stranded oligonucleotide was co-injected with the double-stranded DNA.
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            Single-copy insertion of transgenes in Caenorhabditis elegans.

            At present, transgenes in Caenorhabditis elegans are generated by injecting DNA into the germline. The DNA assembles into a semistable extrachromosomal array composed of many copies of injected DNA. These transgenes are typically overexpressed in somatic cells and silenced in the germline. We have developed a method that inserts a single copy of a transgene into a defined site. Mobilization of a Mos1 transposon generates a double-strand break in noncoding DNA. The break is repaired by copying DNA from an extrachromosomal template into the chromosomal site. Homozygous single-copy insertions can be obtained in less than 2 weeks by injecting approximately 20 worms. We have successfully inserted transgenes as long as 9 kb and verified that single copies are inserted at the targeted site. Single-copy transgenes are expressed at endogenous levels and can be expressed in the female and male germlines.
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              Specific interference by ingested dsRNA.

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                Author and article information

                Journal
                101215604
                32338
                Nat Methods
                Nature methods
                1548-7091
                1548-7105
                3 May 2010
                30 May 2010
                July 2010
                1 January 2011
                : 7
                : 7
                : 554-559
                Affiliations
                [1 ]Department of Biological Sciences, Columbia University New York, New York, 10027
                Author notes
                [* ]To whom correspondence should be sent at: Department of Biological Sciences, 1012 Fairchild, MC#2446, Columbia University, 1212 Amsterdam Avenue, New York, NY 10027, Phone: 212-854-8870, Fax: 212-865-8246, mc21@ 123456columbia.edu
                [2]

                Present address: Centro de Envejecimiento y Regeneracion, Centro de Regulacion Celular y Patologia Joaquin V. Luco, MIFAB, Facultad de Ciencias Biologicas, P. Universidad Catolica de Chile, Alameda 340, Santiago, Chile

                [3]

                Present address: LifeSensors, Inc., 271 Great Valley Parkway, Malvern, PA, 19355

                [4]

                These authors contributed equally to this work

                Article
                nihpa199834
                10.1038/nmeth.1463
                2894993
                20512143
                65dc4359-85dc-4b85-8c9e-39fbecb0e50b

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                History
                Funding
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R37 GM030997-27S1 ||GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R37 GM030997-27 ||GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R37 GM030997-26 ||GM
                Funded by: National Institute of General Medical Sciences : NIGMS
                Award ID: R37 GM030997-25 ||GM
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                Life sciences
                Life sciences

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