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      A TRAF-like motif of ICOS controls development of germinal center T follicular helper cells via TBK1

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          Abstract

          Inducible costimulator (ICOS) signaling fuels the stepwise development of T follicular helper (T FH) cells. However, a signaling pathway unique to ICOS has not been identified. We show that TANK-binding kinase 1 (TBK1) associates with ICOS via a conserved motif, IProx, which shares homology with tumor necrosis factor receptor (TNFR)-associated factors, TRAF2 and TRAF3. Disruption of this motif abolishes the association with TBK1, thus identifying a TBK1-binding consensus. Mutation of this motif in ICOS, or depletion of TBK1 in T cells severely impaired the differentiation of germinal center (GC) T FH, B cell and antibody responses, but was dispensable for early T FH differentiation. These results reveal a novel ICOS-TBK1 signaling pathway that specifies GC T FH cell commitment.

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          Most cited references31

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          Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

          We describe a largely unbiased method for rapid and large-scale proteome analysis by multidimensional liquid chromatography, tandem mass spectrometry, and database searching by the SEQUEST algorithm, named multidimensional protein identification technology (MudPIT). MudPIT was applied to the proteome of the Saccharomyces cerevisiae strain BJ5460 grown to mid-log phase and yielded the largest proteome analysis to date. A total of 1,484 proteins were detected and identified. Categorization of these hits demonstrated the ability of this technology to detect and identify proteins rarely seen in proteome analysis, including low-abundance proteins like transcription factors and protein kinases. Furthermore, we identified 131 proteins with three or more predicted transmembrane domains, which allowed us to map the soluble domains of many of the integral membrane proteins. MudPIT is useful for proteome analysis and may be specifically applied to integral membrane proteins to obtain detailed biochemical information on this unwieldy class of proteins.
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            Triggering the interferon antiviral response through an IKK-related pathway.

            Rapid induction of type I interferon expression, a central event in establishing the innate antiviral response, requires cooperative activation of numerous transcription factors. Although signaling pathways that activate the transcription factors nuclear factor kappaB and ATF-2/c-Jun have been well characterized, activation of the interferon regulatory factors IRF-3 and IRF-7 has remained a critical missing link in understanding interferon signaling. We report here that the IkappaB kinase (IKK)-related kinases IKKepsilon and TANK-binding kinase 1 are components of the virus-activated kinase that phosphorylate IRF-3 and IRF-7. These studies illustrate an essential role for an IKK-related kinase pathway in triggering the host antiviral response to viral infection.
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              DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.

              The components of complex peptide mixtures can be separated by liquid chromatography, fragmented by tandem mass spectrometry, and identified by the SEQUEST algorithm. Inferring a mixture's source proteins requires that the identified peptides be reassociated. This process becomes more challenging as the number of peptides increases. DTASelect, a new software package, assembles SEQUEST identifications and highlights the most significant matches. The accompanying Contrast tool compares DTASelect results from multiple experiments. The two programs improve the speed and precision of proteomic data analysis.
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                Author and article information

                Journal
                100941354
                21750
                Nat Immunol
                Nat. Immunol.
                Nature immunology
                1529-2908
                1529-2916
                7 April 2016
                02 May 2016
                July 2016
                02 November 2016
                : 17
                : 7
                : 825-833
                Affiliations
                [1 ]Division of Cell Biology La Jolla Institute for Allergy and Immunology, La Jolla, California
                [2 ]Department of Chemical Physiology, The Scripps Research Institute, La Jolla, California
                [3 ]Division of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, La Jolla, California
                [4 ]Division of Infectious Diseases, School of Medicine, University of California San Diego, La Jolla, California
                Author notes
                Correspondence should be addressed to: Kok-Fai Kong ( kfkong@ 123456lji.org ) and Shane Crotty ( shane@ 123456lji.org )
                [‡]

                These authors share senior authorship.

                [5]

                Current Address: Transplantation Research Institute, Department of Medicine, Seoul National University College of Medicine, Seoul, South Korea.

                Article
                NIHMS774426
                10.1038/ni.3463
                4915981
                27135603
                65f23dac-f658-4659-aab4-7a3fddc479b1

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                Immunology
                Immunology

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