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      Abundance indices and biological traits of juvenile salmon ( Salmo salar ) sampled in three rivers on the Atlantic and Channel coasts (France)

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          Abstract

          Abstract
          Background

          Atlantic Salmon ( Salmo salar ) is an anadromous migratory species adapted to cool temperatures. It is protected by the Bern convention and by the European Habitats Directive. It has been listed as vulnerable by the French IUCN Red List. Salmon decline is the result of combined and cumulated, mainly anthropic, causes: climate change, increasingly high number of impoundments, degradation of water quality and habitat and over-exploitation by fisheries. Monitoring of this species has been carried out on three rivers in France (Southern part of the distribution area) to produce data and knowledge (growth, precocious maturity, survival) for stock management.

          For 24 years, a specific and standardised electric fishing protocol has been used to target young-of-the-year (0+ parr) Atlantic salmon. Sampling was restricted to areas with shallow running water that flows over a coarse bottom substrate, i.e. the preferred habitat of young salmon. This monitoring and inventory of growing areas thus allows assessment of juvenile recruitment and provides baseline data required to calculate total allowable catches (TACs).

          New information

          The dataset currently consists of 47,077 occurrence data points from 105 sites spanning up to 24 years in three different watersheds in France. Beyond our project, this dataset has a clear utility to research since it associates abundance measurements with the measurement of biological traits and the collection of tissue samples. It allows for current and retrospective characterisation of individuals or populations, according to life history traits and genetic features in relation to changes in environmental conditions. The fact that the monitoring takes place in France, the southern part of the distribution area, over 24 years, makes the dataset particularly relevant for climate change studies.

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          Most cited references18

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          Fish Sedation, Anesthesia, Analgesia, and Euthanasia: Considerations, Methods, and Types of Drugs

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            Fish sedation, analgesia, anesthesia, and euthanasia: considerations, methods, and types of drugs.

            Fish display robust neuroendocrine and physiologic stress responses to noxious stimuli. Many anesthetic, sedative, or analgesic drugs used in other vertebrates reduce stress in fish, decrease handling trauma, minimize movement and physiologic changes in response to nociceptive stimuli, and can be used for euthanasia. But extrapolating from limited published anesthetic and sedative data to all fish species is potentially harmful because of marked anatomic, physiologic, and behavioral variations; instead, a stepwise approach to anesthetizing or sedating unfamiliar species or using unproven drugs for familiar species is advisable. Additionally, knowledge of how water quality influences anesthesia or sedation helps limit complications. The most common method of drug administration is through immersion, a technique analogous to gaseous inhalant anesthesia in terrestrial animals, but the use of injectable anesthetic and sedative agents (primarily intramuscularly, but also intravenously) is increasing. Regardless of the route of administration, routine preprocedural preparation is appropriate, to stage both the animals and the supplies for induction, maintenance, and recovery. Anesthetic and sedation monitoring and resuscitation are similar to those for other vertebrates. Euthanasia is most commonly performed using an overdose of an immersion drug but injectable agents are also effective. Analgesia is an area in need of significant research as only a few studies exist and they provide some contrasting results. However, fish have mu and kappa opiate receptors throughout the brain, making it reasonable to expect some effect of at least opioid treatments in fish experiencing noxious stimuli.
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              Assessing adaptive phenotypic plasticity by means of conditional strategies from empirical data: the latent environmental threshold model.

              Conditional strategies are the most common form of discrete phenotypic plasticity. In a conditional strategy, the phenotype expressed by an organism is determined by the difference between an environmental cue and a threshold, both of which may vary among individuals. The environmental threshold model (ETM) has been proposed as a mean to understand the evolution of conditional strategies, but has been surprisingly seldom applied to empirical studies. A hindrance for the application of the ETM is that often, the proximate cue triggering the phenotypic expression and the individual threshold are not measurable, and can only be assessed using a related observable cue. We describe a new statistical model that can be applied in this common situation. The Latent ETM (LETM) allows for a measurement error in the phenotypic expression of the individual environmental cue and a purely genetically determined threshold. We show that coupling our model with quantitative genetic methods allows an evolutionary approach including an estimation of the heritability of conditional strategies. We evaluate the performance of the LETM with a simulation study and illustrate its utility by applying it to empirical data on the size-dependent smolting process for stream-dwelling Atlantic salmon juveniles.
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                Author and article information

                Contributors
                Journal
                Biodivers Data J
                Biodivers Data J
                Biodiversity Data Journal
                Biodiversity Data Journal
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2828
                2017
                09 November 2017
                : 5
                : e15125
                Affiliations
                [1 ] U3E, Ecologie et Ecotoxicologie aquatique,INRA, pôle Gest'Aqua, 35042 Rennes, France
                [2 ] AFB, pôle Gest’Aqua, 35042 Rennes, France
                [3 ] ECOBIOP, INRA, University Pau & Pays Adour, Aquapôle, Quartier Ibarron, 64310 Saint-Pée-sur-Nivelle, France
                [4 ] Fédération du Morbihan pour la Pêche et la Protection du Milieu Aquatique, 56890 Saint-Avé, France
                Author notes
                Corresponding author: Frédéric Marchand ( frederic.marchand@ 123456inra.fr ).

                Academic editor: Yasen Mutafchiev

                Author information
                https://orcid.org/0000-0002-9614-8602
                Article
                Biodiversity Data Journal 7262
                10.3897/BDJ.5.e15125
                5740413
                66ec6921-6c1c-474f-8868-44db93d99699
                Frédéric Marchand, Laurent Beaulaton, Etienne Prévost, Richard Delanoë, Jean-Pierre Destouches, François Gueraud, Yoann Guilloux, Nicolas Jeannot, Emmanuel Huchet, Frédéric Lange, Jacques Rives, Julien Tremblay, Nadine Herrard, Didier Azam

                This is an open access article distributed under the terms of the Creative Commons Attribution License 4.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 17 July 2017
                : 03 November 2017
                Page count
                Figures: 1, Tables: 0, References: 18
                Funding
                Data collection is supported by a grant from INRA (Institut National de la Recherche Agronomique), AFB (Agence Française de la Biodiversité) and FDPPMA56 (Fédération du Morbihan pour la Pêche et la Protection du Milieu Aquatique).
                Categories
                Data Paper (Biosciences)
                Salmonidae
                Freshwater Biota & Ecosystems
                France

                abundance,biological traits,juvenile,coastal river,salmo salar,salmon

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