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      Clinical spectrum, genetic complexity and therapeutic approaches for retinal disease caused by ABCA4 mutations

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          Abstract

          The ABCA4 protein (then called a “rim protein”) was first identified in 1978 in the rims and incisures of rod photoreceptors. The corresponding gene, ABCA4, was cloned in 1997, and variants were identified as the cause of autosomal recessive Stargardt disease (STGD1). Over the next two decades, variation in ABCA4 has been attributed to phenotypes other than the classically defined STGD1 or fundus flavimaculatus, ranging from early onset and fast progressing cone-rod dystrophy and retinitis pigmentosa-like phenotypes to very late onset cases of mostly mild disease sometimes resembling, and confused with, age-related macular degeneration. Similarly, analysis of the ABCA4 locus uncovered a trove of genetic information, including >1200 disease-causing mutations of varying severity, and of all types – missense, nonsense, small deletions/insertions, and splicing affecting variants, of which many are located deep-intronic. Altogether, this has greatly expanded our understanding of complexity not only of the diseases caused by ABCA4 mutations, but of all Mendelian diseases in general. This review provides an in depth assessment of the cumulative knowledge of ABCA4-associated retinopathy – clinical manifestations, genetic complexity, pathophysiology as well as current and proposed therapeutic approaches.

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          Development and applications of CRISPR-Cas9 for genome engineering.

          Recent advances in genome engineering technologies based on the CRISPR-associated RNA-guided endonuclease Cas9 are enabling the systematic interrogation of mammalian genome function. Analogous to the search function in modern word processors, Cas9 can be guided to specific locations within complex genomes by a short RNA search string. Using this system, DNA sequences within the endogenous genome and their functional outputs are now easily edited or modulated in virtually any organism of choice. Cas9-mediated genetic perturbation is simple and scalable, empowering researchers to elucidate the functional organization of the genome at the systems level and establish causal linkages between genetic variations and biological phenotypes. In this Review, we describe the development and applications of Cas9 for a variety of research or translational applications while highlighting challenges as well as future directions. Derived from a remarkable microbial defense system, Cas9 is driving innovative applications from basic biology to biotechnology and medicine. Copyright © 2014 Elsevier Inc. All rights reserved.
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            Base editing: precision chemistry on the genome and transcriptome of living cells

            RNA-guided programmable nucleases from CRISPR systems generate precise breaks in DNA or RNA at specified positions. In cells, this activity can lead to changes in DNA sequence or RNA transcript abundance. Base editing is a newer genome editing approach that uses components from CRISPR systems together with other enzymes to directly install point mutations into cellular DNA or RNA without making double-stranded DNA breaks (DSBs). DNA base editors comprise a catalytically disabled nuclease fused to a nucleobase deaminase enzyme and, in some cases, a DNA glycosylase inhibitor. RNA base editors achieve analogous changes using components that target RNA. Base editors directly convert one base or base pair into another, enabling the efficient installation of point mutations in non-dividing cells without generating excess undesired editing byproducts. In this Review, we summarize base editing strategies to generate specific and precise point mutations in genomic DNA and RNA, highlight recent developments that expand the scope, specificity, precision, and in vivo delivery of base editors, and discuss limitations and future directions of base editing for research and therapeutic applications.
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              Human embryonic stem cell-derived retinal pigment epithelium in patients with age-related macular degeneration and Stargardt's macular dystrophy: follow-up of two open-label phase 1/2 studies

              The Lancet, 385(9967), 509-516
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                Author and article information

                Journal
                9431859
                20937
                Prog Retin Eye Res
                Prog Retin Eye Res
                Progress in retinal and eye research
                1350-9462
                1873-1635
                13 September 2020
                09 April 2020
                November 2020
                15 December 2020
                : 79
                : 100861
                Affiliations
                [a ]Department of Human Genetics, Radboud University Medical Center, PO Box 9101, 6500 HB, Nijmegen, the Netherlands
                [b ]Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, PO Box 9104, 6500 HE, Nijmegen, the Netherlands
                [c ]Department of Ophthalmology, Columbia University, New York, NY, 10032, USA
                [d ]Department of Genetics & Development, Columbia University, New York, NY, 10032, USA
                [e ]Department of Pathology & Cell Biology, Columbia University, New York, NY, 10032, USA
                Author notes
                [* ]Corresponding author. Department of Human Genetics, Radboud university Medical Center, PO Box 9101, 6500 HB, Nijmegen, the Netherlands. frans.cremers@ 123456radboudumc.nl (F.P.M. Cremers)
                [** ]Corresponding author. Department of Ophthalmology, Columbia University, New York, NY, 10032, USA. rla22@ 123456cumc.columbia.edu (R. Allikmets).
                Article
                NIHMS1627942
                10.1016/j.preteyeres.2020.100861
                7544654
                32278709
                683ad6db-58a3-4d9c-97f9-5f37db485d38

                This is an open access article under the CC BY license ( http://creativecommons.org/licenses/BY/4.0/).

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                Categories
                Article

                Vision sciences
                stargardt disease,abca4-associated retinopathy,allelic heterogeneity,autofluorescence,phenocopies,hypomorphic variant,penetrance,splice defects,pseudoexon,structural variant,therapy

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