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      ENCODE Data in the UCSC Genome Browser: year 5 update

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          Abstract

          The Encyclopedia of DNA Elements (ENCODE), http://encodeproject.org, has completed its fifth year of scientific collaboration to create a comprehensive catalog of functional elements in the human genome, and its third year of investigations in the mouse genome. Since the last report in this journal, the ENCODE human data repertoire has grown by 898 new experiments (totaling 2886), accompanied by a major integrative analysis. In the mouse genome, results from 404 new experiments became available this year, increasing the total to 583, collected during the course of the project. The University of California, Santa Cruz, makes this data available on the public Genome Browser http://genome.ucsc.edu for visual browsing and data mining. Download of raw and processed data files are all supported. The ENCODE portal provides specialized tools and information about the ENCODE data sets.

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          Author and article information

          Journal
          Nucleic Acids Res
          Nucleic Acids Res
          nar
          nar
          Nucleic Acids Research
          Oxford University Press
          0305-1048
          1362-4962
          January 2013
          26 November 2012
          26 November 2012
          : 41
          : Database issue , Database issue
          : D56-D63
          Affiliations
          1Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, 2Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305, USA, 3Vertebrate Genomics Group, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK and 4Howard Hughes Medical Institute, UCSC, Santa Cruz, CA 95064, USA
          Author notes
          *To whom correspondence should be addressed. Tel: +1 831 459 1472; Fax: +1 831 459 1809; Email: kate@ 123456soe.ucsc.edu
          Article
          gks1172
          10.1093/nar/gks1172
          3531152
          23193274
          © The Author(s) 2012. Published by Oxford University Press.

          This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial reuse, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com.

          Page count
          Pages: 8
          Categories
          Articles

          Genetics

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