5
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Concepts and Core Principles of Fragment-Based Drug Design

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          In this review, a general introduction to fragment-based drug design and the underlying concepts is given. General considerations and methodologies ranging from library selection/construction over biophysical screening and evaluation methods to in-depth hit qualification and subsequent optimization strategies are discussed. These principles can be generally applied to most classes of drug targets. The examples given for fragment growing, merging, and linking strategies at the end of the review are set in the fields of enzyme-inhibitor design and macromolecule–macromolecule interaction inhibition. Building upon the foundation of fragment-based drug discovery (FBDD) and its methodologies, we also highlight a few new trends in FBDD.

          Related collections

          Most cited references112

          • Record: found
          • Abstract: not found
          • Article: not found

          Ligand efficiency: a useful metric for lead selection.

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Rapid measurement of binding constants and heats of binding using a new titration calorimeter.

            A new titration calorimeter is described and results are presented for the binding of cytidine 2'-monophosphate (2'CMP) to the active site of ribonuclease A. The instrument characteristics include very high sensitivity, rapid calorimetric response, and fast thermal equilibration. Convenient software is available for instrument operation, data collection, data reduction, and deconvolution to obtain least-squares estimates of binding parameters n, delta H degree, delta S degree, and the binding constant K. Sample through-put for the instrument is high, and under favorable conditions binding constants as large as 10(8) M-1 can be measured. The bovine ribonuclease A (RNase)/2'CMP system was studied over a 50-fold range of RNase concentration and at two different temperatures. The binding constants were in the 10(5) to 10(6) M-1 range, depending on conditions, and heats of binding ca. -15,000 cal/mol. Repeat determinations suggested errors of only a few percent in n, delta H degree, and K values over the most favorable concentration range.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: found
              Is Open Access

              Surface Plasmon Resonance: A Versatile Technique for Biosensor Applications

              Surface plasmon resonance (SPR) is a label-free detection method which has emerged during the last two decades as a suitable and reliable platform in clinical analysis for biomolecular interactions. The technique makes it possible to measure interactions in real-time with high sensitivity and without the need of labels. This review article discusses a wide range of applications in optical-based sensors using either surface plasmon resonance (SPR) or surface plasmon resonance imaging (SPRI). Here we summarize the principles, provide examples, and illustrate the utility of SPR and SPRI through example applications from the biomedical, proteomics, genomics and bioengineering fields. In addition, SPR signal amplification strategies and surface functionalization are covered in the review.
                Bookmark

                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                Molecules
                Molecules
                molecules
                Molecules
                MDPI
                1420-3049
                26 November 2019
                December 2019
                : 24
                : 23
                : 4309
                Affiliations
                [1 ]Helmholtz-Institute for Pharmaceutical Research Saarland (HIPS)-Helmholtz Centre for Infection Research (HZI), Department of Drug Design and Optimization (DDOP), Campus E8.1, 66123 Saarbrücken, Germany; Philine.Kirsch@ 123456helmholtz-hzi.de (P.K.); Alwin.Hartman@ 123456helmholtz-hzi.de (A.M.H.); Anna.Hirsch@ 123456helmholtz-hzi.de (A.K.H.H.)
                [2 ]Department of Pharmacy, Saarland University, Campus E8.1, 66123 Saarbrücken, Germany
                [3 ]German Centre for Infection Research (DZIF), Partner Site Hannover-Braunschweig, 66123 Saarbrücken, Germany
                [4 ]Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands
                Author notes
                [* ]Correspondence: Martin.Empting@ 123456helmholtz-hzi.de ; Tel.: +49-681-988-062-031
                Author information
                https://orcid.org/0000-0002-0987-9088
                Article
                molecules-24-04309
                10.3390/molecules24234309
                6930586
                31779114
                6934774f-3217-4da7-86ed-70e9e1f5e495
                © 2019 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 28 October 2019
                : 20 November 2019
                Categories
                Review

                fragment-based drug design,biophysical screening,rule-of-three,ligand efficiency,fragment optimization

                Comments

                Comment on this article