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      Steroid-resistant nephrotic syndrome in infants caused by a novel compound heterozygous mutation of the NUP93 : A CARE case report

      case-report

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          Abstract

          Rationale:

          Steroid-resistant nephrotic syndrome (SRNS) is a special kidney disease. SRNS is characterized by steroid-resistant, clinical variability, and genetic heterogeneity. Patients with SRNS often may eventually need renal transplantation.

          Patient concerns:

          A 10-month-old Chinese male infant presented with oliguria, renal dysfunction, hypertension, and anemia.

          Diagnoses:

          Combined with clinical manifestations, laboratory testing and sequencing results, the patient was diagnosed as SRNS.

          Interventions:

          Combined intravenous methylprednisolone and cefoperazone sulbactam did not improve the patient's condition. Thus, SRNS associated with hereditary nephrotic syndrome was strongly suspected. Genetic testing for hereditary renal disease of the patient revealed 2 novel heterozygous mutations in the Nucleoporin 93 ( NUP93) gene, which were predicted pathogenic and harmful by bioinformatic softwares of SIFT, PolyPhen_2 and REVEL.

          Outcomes:

          As general physical health deterioration and renal dysfunction, the patient died of a severe infection.

          Lessons:

          The novel NUP93 heterozygous mutations identified in the current study broadened the genetic spectrum of SRNS and further deepened our insight into pathogenic mutations of NUP93 to improve disease diagnosis.

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          Most cited references23

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          In situ structural analysis of the human nuclear pore complex

          Summary Nuclear pore complexes (NPCs) are fundamental components of all eukaryotic cells that mediate nucleocytoplasmic exchange. Elucidating their 110 MDa structure imposes a formidable challenge and requires in situ structural biology approaches. Fifteen out of about thirty nucleoporins (Nups) are structured and form the Y- and inner ring complexes. These two major scaffolding modules assemble in multiple copies into an eight-fold rotationally symmetric structure that fuses the inner and outer nuclear membranes to form a central channel of ∼60 nm in diameter 1. The scaffold is decorated with transport channel Nups that often contain phenylalanine (FG)-repeat sequences and mediate the interaction with cargo complexes. Although the architectural arrangement of parts of the Y-complex has been elucidated, it is unclear how exactly it oligomerizes in situ. Here, we combined cryo electron tomography with mass spectrometry, biochemical analysis, perturbation experiments and structural modeling to generate the most comprehensive architectural model of the NPC to date. Our data suggest previously unknown protein interfaces across Y-complexes and to inner ring complex members. We demonstrate that the higher eukaryotic transport channel Nup358 (RanBP2) has a previously unanticipated role in Y-complex oligomerization. Our findings blur the established boundaries between scaffold and transport channel Nups. We conclude that, similarly to coated vesicles, multiple copies of the same structural building block - although compositionally identical - engage in different local sets of interactions and conformations.
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            Determining the architectures of macromolecular assemblies.

            To understand the workings of a living cell, we need to know the architectures of its macromolecular assemblies. Here we show how proteomic data can be used to determine such structures. The process involves the collection of sufficient and diverse high-quality data, translation of these data into spatial restraints, and an optimization that uses the restraints to generate an ensemble of structures consistent with the data. Analysis of the ensemble produces a detailed architectural map of the assembly. We developed our approach on a challenging model system, the nuclear pore complex (NPC). The NPC acts as a dynamic barrier, controlling access to and from the nucleus, and in yeast is a 50 MDa assembly of 456 proteins. The resulting structure, presented in an accompanying paper, reveals the configuration of the proteins in the NPC, providing insights into its evolution and architectural principles. The present approach should be applicable to many other macromolecular assemblies.
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              • Article: not found

              Integrated structural analysis of the human nuclear pore complex scaffold.

              The nuclear pore complex (NPC) is a fundamental component of all eukaryotic cells that facilitates nucleocytoplasmic exchange of macromolecules. It is assembled from multiple copies of about 30 nucleoporins. Due to its size and complex composition, determining the structure of the NPC is an enormous challenge, and the overall architecture of the NPC scaffold remains elusive. In this study, we have used an integrated approach based on electron tomography, single-particle electron microscopy, and crosslinking mass spectrometry to determine the structure of a major scaffold motif of the human NPC, the Nup107 subcomplex, in both isolation and integrated into the NPC. We show that 32 copies of the Nup107 subcomplex assemble into two reticulated rings, one each at the cytoplasmic and nuclear face of the NPC. This arrangement may explain how changes of the diameter are realized that would accommodate transport of huge cargoes.
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                Author and article information

                Journal
                Medicine (Baltimore)
                Medicine (Baltimore)
                MEDI
                Medicine
                Lippincott Williams & Wilkins (Hagerstown, MD )
                0025-7974
                1536-5964
                12 February 2021
                12 February 2021
                : 100
                : 6
                : e24627
                Affiliations
                [a ]Department of Nephrology and Rheumatology, Kunming Children's Hospital, Kunming
                [b ]Dali University, Dali
                [c ]Kunming Key Laboratory of Children Infection and Immunity, Yunnan Key Laboratory of Children's Major Disease Research, Yunnan Medical Center for Pediatric Diseases, Yunnan Institute of Pediatrics, Kunming Children's Hospital, Kunming, Yunnan, China.
                Author notes
                []Correspondence: Jing-Jing Cui, Kunming Children's Hospital, Kunming, Yunnan China (e-mail: cuijingjing@ 123456etyy.cn ).
                Author information
                http://orcid.org/0000-0002-3841-4298
                Article
                MD-D-20-10992 24627
                10.1097/MD.0000000000024627
                7886470
                33578576
                695142f0-ada0-46f7-bb1c-ae1195f3c75d
                Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc.

                This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/licenses/by/4.0

                History
                : 10 November 2020
                : 6 January 2021
                : 15 January 2021
                Funding
                Funded by: the Joint Special Fund for Basic Research from Yunnan Provincial Science and Technology Department and Kunming Medical University
                Award ID: 2017FE468-100
                Award Recipient : Bo Zhao
                Funded by: Kunming Research Center for Blood Purification in Children
                Award ID: 2018-SW[R]-18
                Award Recipient : Bo Zhao
                Funded by: Kunming Health Science and Technology Talent Project-100 Projects
                Award ID: 2019-SW[P]-16
                Award Recipient : Bo Zhao
                Funded by: the National Natural Science Foundation of China
                Award ID: 81560262
                Award Recipient : Li Li
                Funded by: the Basic Applied Study Planning Projects of Yunnan Province
                Award ID: 2018FB130
                Award Recipient : Li Li
                Categories
                5200
                Research Article
                Clinical Case Report
                Custom metadata
                TRUE

                chinese infant,genetics,nup93,steroid-resistant nephrotic syndrome

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