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      Co-Occurrence Patterns of Plants and Soil Bacteria in the High-Alpine Subnival Zone Track Environmental Harshness

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          Abstract

          Plants and soil microorganisms interact to play a central role in ecosystem functioning. To determine the potential importance of biotic interactions in shaping the distributions of these organisms in a high-alpine subnival landscape, we examine co-occurrence patterns between plant species and bulk soil bacteria abundances. In this context, a co-occurrence relationship reflects a combination of several assembly processes: that both parties can disperse to the site, that they can survive the abiotic environmental conditions, and that interactions between the biota either facilitate survival or allow for coexistence. Across the entire landscape, 31% of the bacterial sequences in this dataset were significantly correlated to the abundance distribution of one or more plant species. These sequences fell into 14 clades, 6 of which are related to bacteria that are known to form symbioses with plants in other systems. Abundant plant species were more likely to have significant as well as stronger correlations with bacteria and these patterns were more prevalent in lower altitude sites. Conversely, correlations between plant species abundances and bacterial relative abundances were less frequent in sites near the snowline. Thus, plant-bacteria associations became more common as environmental conditions became less harsh and plants became more abundant. This pattern in co-occurrence strength and frequency across the subnival landscape suggests that plant-bacteria interactions are important for the success of life, both below- and above-ground, in an extreme environment.

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          Microbial biogeography: putting microorganisms on the map.

          We review the biogeography of microorganisms in light of the biogeography of macroorganisms. A large body of research supports the idea that free-living microbial taxa exhibit biogeographic patterns. Current evidence confirms that, as proposed by the Baas-Becking hypothesis, 'the environment selects' and is, in part, responsible for spatial variation in microbial diversity. However, recent studies also dispute the idea that 'everything is everywhere'. We also consider how the processes that generate and maintain biogeographic patterns in macroorganisms could operate in the microbial world.
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            Benefits of plant diversity to ecosystems: immediate, filter and founder effects

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              The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems.

              Microbes are the unseen majority in soil and comprise a large portion of life's genetic diversity. Despite their abundance, the impact of soil microbes on ecosystem processes is still poorly understood. Here we explore the various roles that soil microbes play in terrestrial ecosystems with special emphasis on their contribution to plant productivity and diversity. Soil microbes are important regulators of plant productivity, especially in nutrient poor ecosystems where plant symbionts are responsible for the acquisition of limiting nutrients. Mycorrhizal fungi and nitrogen-fixing bacteria are responsible for c. 5-20% (grassland and savannah) to 80% (temperate and boreal forests) of all nitrogen, and up to 75% of phosphorus, that is acquired by plants annually. Free-living microbes also strongly regulate plant productivity, through the mineralization of, and competition for, nutrients that sustain plant productivity. Soil microbes, including microbial pathogens, are also important regulators of plant community dynamics and plant diversity, determining plant abundance and, in some cases, facilitating invasion by exotic plants. Conservative estimates suggest that c. 20 000 plant species are completely dependent on microbial symbionts for growth and survival pointing to the importance of soil microbes as regulators of plant species richness on Earth. Overall, this review shows that soil microbes must be considered as important drivers of plant diversity and productivity in terrestrial ecosystems.
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                Author and article information

                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbio.
                Frontiers in Microbiology
                Frontiers Research Foundation
                1664-302X
                11 October 2012
                2012
                : 3
                : 347
                Affiliations
                [1] 1Ecosystem Sciences, Commonwealth Scientific and Industrial Research Organisation Acton, ACT, Australia
                [2] 2Department of Environmental Science, Policy & Management, University of California at Berkeley Berkeley, CA, USA
                [3] 3Department of Ecology and Evolutionary Biology, University of Colorado at Boulder Boulder, CO, USA
                Author notes

                Edited by: Ashley Shade, Yale University, USA

                Reviewed by: Michael S. Strickland, Yale University, USA; Lucie Zinger, Centre National de la Recherche Scientifique, France

                *Correspondence: Andrew J. King, Ecosystem Sciences, Commonwealth Scientific and Industrial Research Organisation, Clunies Ross Street, Acton, ACT 2601, Australia. e-mail: kin27g@ 123456csiro.au

                This article was submitted to Frontiers in Terrestrial Microbiology, a specialty of Frontiers in Microbiology.

                Article
                10.3389/fmicb.2012.00347
                3469205
                23087675
                696a0d74-1cc5-4387-a8ad-8242efeb4c27
                Copyright © 2012 King, Farrer, Suding and Schmidt.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.

                History
                : 15 June 2012
                : 08 September 2012
                Page count
                Figures: 5, Tables: 2, Equations: 0, References: 91, Pages: 14, Words: 12717
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                niwot ridge,plant-microbe interactions,community assembly,co-occurrence networks,facilitation,mutualism,soil microbial communities,symbiosis

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