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      Phylogenetic placement of Tritirachium strains from the URM culture collection originally founded by Augusto Chaves Batista (1916-1967) in Brazil, and the description of T. batistae sp. nov.

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          Abstract

          ABSTRACT Twenty-seven Tritirachium strains were present in the URM culture collection originally founded in Brazil by Augusto Chaves Batista. Fifteen freshly-prepared cultures were obtained from these original strains preserved under mineral oil. DNA was extracted for analysing phylogenetic relationships using the sequence information available from Tritirachium type materials and reference strains. Phylogenetic analysis using the internal transcribed spacer (ITS) ribosomal DNA sequences revealed that eight of these strains belong to the same clade as of T. oryzae and that the four other strains belong to the same clade as of T. candoliense. The strain URM 38, which was previously identified as “T. brumptii”, appeared to exist as a single lineage, related to T. roseum and T. candoliense. Based on morphological features and multi-locus phylogenetic analysis, including the analyses of ITS and LSU rDNA, and rpb2 sequences, we propose that URM 38 belongs to the new species T. batistae. This novel species exhibited velutinous to cottony colonies of varying colour, septate hyphae without clamp connections, conidiophores reduced to conidiogenous cells, conidiogenous cells with a distinct sympodial rachis, and single-cell conidia that was globose to subglobose, obovoid, smooth, and hyaline. The morphological features of species accepted in Tritirachium are included in this study.

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          Internet-accessible DNA sequence database for identifying fusaria from human and animal infections.

          Because less than one-third of clinically relevant fusaria can be accurately identified to species level using phenotypic data (i.e., morphological species recognition), we constructed a three-locus DNA sequence database to facilitate molecular identification of the 69 Fusarium species associated with human or animal mycoses encountered in clinical microbiology laboratories. The database comprises partial sequences from three nuclear genes: translation elongation factor 1α (EF-1α), the largest subunit of RNA polymerase (RPB1), and the second largest subunit of RNA polymerase (RPB2). These three gene fragments can be amplified by PCR and sequenced using primers that are conserved across the phylogenetic breadth of Fusarium. Phylogenetic analyses of the combined data set reveal that, with the exception of two monotypic lineages, all clinically relevant fusaria are nested in one of eight variously sized and strongly supported species complexes. The monophyletic lineages have been named informally to facilitate communication of an isolate's clade membership and genetic diversity. To identify isolates to the species included within the database, partial DNA sequence data from one or more of the three genes can be used as a BLAST query against the database which is Web accessible at FUSARIUM-ID (http://isolate.fusariumdb.org) and the Centraalbureau voor Schimmelcultures (CBS-KNAW) Fungal Biodiversity Center (http://www.cbs.knaw.nl/fusarium). Alternatively, isolates can be identified via phylogenetic analysis by adding sequences of unknowns to the DNA sequence alignment, which can be downloaded from the two aforementioned websites. The utility of this database should increase significantly as members of the clinical microbiology community deposit in internationally accessible culture collections (e.g., CBS-KNAW or the Fusarium Research Center) cultures of novel mycosis-associated fusaria, along with associated, corrected sequence chromatograms and data, so that the sequence results can be verified and isolates are made available for future study.
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            Notes, outline and divergence times of Basidiomycota

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              Proteinase K from Tritirachium album Limber

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                Author and article information

                Journal
                abb
                Acta Botanica Brasilica
                Acta Bot. Bras.
                Sociedade Botânica do Brasil (Belo Horizonte, BA, Brazil )
                0102-3306
                1677-941X
                June 2020
                : 34
                : 2
                : 290-300
                Affiliations
                [2] Recife Pernambuco orgnameUniversidade Federal de Pernambuco orgdiv1Centro de Biociências orgdiv2Departamento de Micologia Professor Chaves Batista Brazil
                [1] Goiânia Goiás orgnameUniversidade Federal de Goiás orgdiv1Instituto de Patologia Tropical e Saúde Pública orgdiv2Departamento de Biociências e Tecnologia Brazil
                Article
                S0102-33062020000200290 S0102-3306(20)03400200290
                10.1590/0102-33062019abb0356
                696f0f55-a364-48db-920b-31ddf7158423

                This work is licensed under a Creative Commons Attribution 4.0 International License.

                History
                : 11 February 2020
                : 29 October 2019
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 61, Pages: 11
                Product

                SciELO Brazil

                Categories
                Articles

                taxonomy,phylogeny,Basidiomycota,Brazilian fungi,fungal preservation

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