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      Coinfections and their molecular consequences in the porcine respiratory tract

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          Abstract

          Understudied, coinfections are more frequent in pig farms than single infections. In pigs, the term “Porcine Respiratory Disease Complex” (PRDC) is often used to describe coinfections involving viruses such as swine Influenza A Virus (swIAV), Porcine Reproductive and Respiratory Syndrome Virus (PRRSV), and Porcine CircoVirus type 2 (PCV2) as well as bacteria like Actinobacillus pleuropneumoniae, Mycoplasma hyopneumoniae and Bordetella bronchiseptica. The clinical outcome of the various coinfection or superinfection situations is usually assessed in the studies while in most of cases there is no clear elucidation of the fine mechanisms shaping the complex interactions occurring between microorganisms. In this comprehensive review, we aimed at identifying the studies dealing with coinfections or superinfections in the pig respiratory tract and at presenting the interactions between pathogens and, when possible, the mechanisms controlling them. Coinfections and superinfections involving viruses and bacteria were considered while research articles including protozoan and fungi were excluded. We discuss the main limitations complicating the interpretation of coinfection/superinfection studies, and the high potential perspectives in this fascinating research field, which is expecting to gain more and more interest in the next years for the obvious benefit of animal health.

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          Most cited references125

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          Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS–coronavirus 2

          Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes the infectious disease COVID-19, which was first reported in Wuhan, China in December, 2019. Despite the tremendous efforts to control the disease, COVID-19 has now spread to over 100 countries and caused a global pandemic. SARS-CoV-2 is thought to have originated in bats; however, the intermediate animal sources of the virus are completely unknown. Here, we investigated the susceptibility of ferrets and animals in close contact with humans to SARS-CoV-2. We found that SARS-CoV-2 replicates poorly in dogs, pigs, chickens, and ducks, but ferrets and cats are permissive to infection. We found experimentally that cats are susceptible to airborne infection. Our study provides important insights into the animal models for SARS-CoV-2 and animal management for COVID-19 control.
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            The co-pathogenesis of influenza viruses with bacteria in the lung.

            Concern that a highly pathogenic virus might cause the next influenza pandemic has spurred recent research into influenza and its complications. Bacterial superinfection in the lungs of people suffering from influenza is a key element that promotes severe disease and mortality. This co-pathogenesis is characterized by complex interactions between co-infecting pathogens and the host, leading to the disruption of physical barriers, dysregulation of immune responses and delays in a return to homeostasis. The net effect of this cascade can be the outgrowth of the pathogens, immune-mediated pathology and increased morbidity. In this Review, advances in our understanding of the underlying mechanisms are discussed, and the key questions that will drive the field forwards are articulated.
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              Organoids in immunological research

              Much of our knowledge regarding the interactions between epithelial tissues and the immune system has been gathered from animal models and co-cultures with cell lines. However, unique features of human cells cannot be modelled in mice, and cell lines are often transformed or genetically immortalized. Organoid technology has emerged as a powerful tool to maintain epithelial cells in a near-native state. In this Review, we discuss how organoids are being used in immunological research to understand the role of epithelial cell-immune cell interactions in tissue development and homeostasis, as well as in diseases such as cancer.
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                Author and article information

                Contributors
                francois.meurens@inrae.fr
                Journal
                Vet Res
                Vet. Res
                Veterinary Research
                BioMed Central (London )
                0928-4249
                1297-9716
                16 June 2020
                16 June 2020
                2020
                : 51
                : 80
                Affiliations
                [1 ]GRID grid.418682.1, ISNI 0000 0001 2175 3974, INRAE, Oniris, , BIOEPAR, ; 44300 Nantes, France
                [2 ]GRID grid.15540.35, ISNI 0000 0001 0584 7022, Swine Virology Immunology Unit, Ploufragan-Plouzané-Niort Laboratory, , ANSES, ; BP 53, 22440 Ploufragan, France
                [3 ]GRID grid.410368.8, ISNI 0000 0001 2191 9284, University of Rennes 1, ; Rennes, France
                [4 ]GRID grid.15540.35, ISNI 0000 0001 0584 7022, Mycoplasmology, Bacteriology and Antibiotics Resistance Unit, Ploufragan-Plouzané-Niort Laboratory, , ANSES, ; BP 53, 22440 Ploufragan, France
                [5 ]GRID grid.15540.35, ISNI 0000 0001 0584 7022, Epidemiology Health and Welfare Unit, Ploufragan-Plouzané-Niort Laboratory, , ANSES, ; BP 53, 22440 Ploufragan, France
                [6 ]Institute of Virology and Immunology (IVI), Sensemattstrasse 293, 3147 Mittelhäusern, Switzerland
                [7 ]GRID grid.14848.31, ISNI 0000 0001 2292 3357, Swine and Poultry Infectious Diseases Research Center, Faculty of Veterinary Medicine, , University of Montreal, ; St-Hyacinthe, QC Canada
                [8 ]GRID grid.268415.c, College of Veterinary Medicine, Comparative Medicine Research Institute, , Yangzhou University, ; Yangzhou, 225009 China
                [9 ]Joint International Research Laboratory of Agriculture and Agri-Product Safety, Yangzhou, 225009 China
                [10 ]GRID grid.5734.5, ISNI 0000 0001 0726 5157, Department of Infectious Diseases and Pathobiology, , University of Bern, ; 3012 Bern, Switzerland
                Author information
                http://orcid.org/0000-0002-0353-4871
                Article
                807
                10.1186/s13567-020-00807-8
                7296899
                32546263
                69728c39-48d4-47d2-a6ad-80be990e6df5
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 24 March 2020
                : 2 June 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100013414, Conseil Régional des Pays de la Loire;
                Award ID: Establishment grant
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100007249, Association Philippe Jabre;
                Award ID: PhD grant
                Award Recipient :
                Categories
                Review
                Custom metadata
                © L'Institut National de Recherche en Agriculture, Alimentation et Environnement (INRAE) 2020

                Veterinary medicine
                Veterinary medicine

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