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      Engineering the Salmonella type III secretion system to export spider silk monomers

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          Abstract

          The type III secretion system (T3SS) exports proteins from the cytoplasm, through both the inner and outer membranes, to the external environment. Here, a system is constructed to harness the T3SS encoded within Salmonella Pathogeneity Island 1 to export proteins of biotechnological interest. The system is composed of an operon containing the target protein fused to an N-terminal secretion tag and its cognate chaperone. Transcription is controlled by a genetic circuit that only turns on when the cell is actively secreting protein. The system is refined using a small human protein (DH domain) and demonstrated by exporting three silk monomers (ADF-1, -2, and -3), representative of different types of spider silk. Synthetic genes encoding silk monomers were designed to enhance genetic stability and codon usage, constructed by automated DNA synthesis, and cloned into the secretion control system. Secretion rates up to 1.8 mg l −1 h −1 are demonstrated with up to 14% of expressed protein secreted. This work introduces new parts to control protein secretion in Gram-negative bacteria, which will be broadly applicable to problems in biotechnology.

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          Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

          We have developed a new method for the identification of signal peptides and their cleavage sites based on neural networks trained on separate sets of prokaryotic and eukaryotic sequence. The method performs significantly better than previous prediction schemes and can easily be applied on genome-wide data sets. Discrimination between cleaved signal peptides and uncleaved N-terminal signal-anchor sequences is also possible, though with lower precision. Predictions can be made on a publicly available WWW server.
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            Outlook for cellulase improvement: screening and selection strategies.

            Cellulose is the most abundant renewable natural biological resource, and the production of biobased products and bioenergy from less costly renewable lignocellulosic materials is important for the sustainable development of human beings. A reduction in cellulase production cost, an improvement in cellulase performance, and an increase in sugar yields are all vital to reduce the processing costs of biorefineries. Improvements in specific cellulase activities for non-complexed cellulase mixtures can be implemented through cellulase engineering based on rational design or directed evolution for each cellulase component enzyme, as well as on the reconstitution of cellulase components. Here, we review quantitative cellulase activity assays using soluble and insoluble substrates, and focus on their advantages and limitations. Because there are no clear relationships between cellulase activities on soluble substrates and those on insoluble substrates, soluble substrates should not be used to screen or select improved cellulases for processing relevant solid substrates, such as plant cell walls. Cellulase improvement strategies based on directed evolution using screening on soluble substrates have been only moderately successful, and have primarily targeted improvement in thermal tolerance. Heterogeneity of insoluble cellulose, unclear dynamic interactions between insoluble substrate and cellulase components, and the complex competitive and/or synergic relationship among cellulase components limit rational design and/or strategies, depending on activity screening approaches. Herein, we hypothesize that continuous culture using insoluble cellulosic substrates could be a powerful selection tool for enriching beneficial cellulase mutants from the large library displayed on the cell surface.
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              Type III secretion machines: bacterial devices for protein delivery into host cells.

              Several Gram-negative pathogenic bacteria have evolved a complex protein secretion system termed type III to deliver bacterial effector proteins into host cells that then modulate host cellular functions. These bacterial devices are present in both plant and animal pathogenic bacteria and are evolutionarily related to the flagellar apparatus. Although type III secretion systems are substantially conserved, the effector molecules they deliver are unique for each bacterial species. Understanding the biology of these devices may allow the development of novel prevention and therapeutic approaches for several infectious diseases.
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                Author and article information

                Journal
                Mol Syst Biol
                Molecular Systems Biology
                Nature Publishing Group
                1744-4292
                2009
                15 September 2009
                : 5
                : 309
                Affiliations
                [1 ]Chemistry and Chemical Biology Graduate Program, University of California—San Francisco, San Francisco, CA, USA
                [2 ]Department of Pharmaceutical Chemistry, University of California—San Francisco, San Francisco, CA, USA
                [3 ]Graduate Group in Biophysics, University of California—San Francisco, San Francisco, CA, USA
                [4 ]DNA2.0, Menlo Park, CA, USA
                Author notes
                [a ]Department of Pharmaceutical Chemistry, University of California—San Francisco, Box 2540, Room 408C, 1700 4th Street, San Francisco, CA 94110, USA. Tel.: +1 415 5027 050; Fax: +1 415 5024 690; cavoigt@ 123456picasso.ucsf.edu
                Article
                msb200962
                10.1038/msb.2009.62
                2758716
                19756048
                69c7d43e-4ff1-40e9-9aeb-07c79414cc49
                Copyright © 2009, EMBO and Nature Publishing Group

                This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits distribution and reproduction in any medium, provided the original author and source are credited. Creation of derivative works is permitted but the resulting work may be distributed only under the same or similar licence to this one. This licence does not permit commercial exploitation without specific permission.

                History
                : 5 May 2009
                : 24 July 2009
                Page count
                Pages: 1
                Categories
                Report

                Quantitative & Systems biology
                genetic parts,systems biology,cellular engineering,automated dna synthesis,biomaterials

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