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      Low pH-induced conformational change and dimerization of sortilin triggers endocytosed ligand release

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          Abstract

          Low pH-induced ligand release and receptor recycling are important steps for endocytosis. The transmembrane protein sortilin, a β-propeller containing endocytosis receptor, internalizes a diverse set of ligands with roles in cell differentiation and homeostasis. The molecular mechanisms of pH-mediated ligand release and sortilin recycling are unresolved. Here we present crystal structures that show the sortilin luminal segment (s-sortilin) undergoes a conformational change and dimerizes at low pH. The conformational change, within all three sortilin luminal domains, provides an altered surface and the dimers sterically shield a large interface while bringing the two s-sortilin C-termini into close proximity. Biophysical and cell-based assays show that members of two different ligand families, (pro)neurotrophins and neurotensin, preferentially bind the sortilin monomer. This indicates that sortilin dimerization and conformational change discharges ligands and triggers recycling. More generally, this work may reveal a double mechanism for low pH-induced ligand release by endocytosis receptors.

          Abstract

          Sortilin is an endocytosis receptor with a luminal β-propeller domain. Here the authors present the structures of the β-propeller domain at neutral and acidic pH, which reveal that sortilin dimerises and undergoes conformational changes at low pH and further propose a model for low pH-induced ligand release by endocytosis receptors.

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          Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

          New developments in the modelling of flexible biological macromolecules from SAXS data offer extended possibilities of using high-resolution models and provide metrics for quantitative characterization of the reconstructed ensembles.
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            SAXS experiments on absolute scale with Kratky systems using water as a secondary standard

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              Structure of the LDL receptor extracellular domain at endosomal pH.

              The low-density lipoprotein receptor mediates cholesterol homeostasis through endocytosis of lipoproteins. It discharges its ligand in the endosome at pH < 6. In the crystal structure at pH = 5.3, the ligand-binding domain (modules R2 to R7) folds back as an arc over the epidermal growth factor precursor homology domain (the modules A, B, beta propeller, and C). The modules R4 and R5, which are critical for lipoprotein binding, associate with the beta propeller via their calcium-binding loop. We propose a mechanism for lipoprotein release in the endosome whereby the beta propeller functions as an alternate substrate for the ligand-binding domain, binding in a calcium-dependent way and promoting lipoprotein release.
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                Author and article information

                Contributors
                b.j.c.janssen@uu.nl
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                22 November 2017
                22 November 2017
                2017
                : 8
                : 1708
                Affiliations
                [1 ]ISNI 0000000120346234, GRID grid.5477.1, Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Faculty of Science, , Utrecht University, ; 3584 CH Utrecht, The Netherlands
                [2 ]ISNI 0000000120346234, GRID grid.5477.1, Biomolecular Mass Spectrometry & Proteomics and Netherlands Proteomics Center, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Faculty of Science, , Utrecht University, ; 3584 CH Utrecht, The Netherlands
                [3 ]ISNI 0000 0004 0638 528X, GRID grid.418923.5, European Molecular Biology Laboratory, Grenoble Outstation, ; Grenoble, 38000 France
                [4 ]ISNI 0000000120346234, GRID grid.5477.1, Van’t Hoff Laboratory for Physical and Colloid Chemistry, Debye Institute for Nanomaterials Science, Faculty of Science, , Utrecht University, ; 3584 CH Utrecht, The Netherlands
                Author information
                http://orcid.org/0000-0002-1504-3690
                http://orcid.org/0000-0001-5062-7723
                http://orcid.org/0000-0003-0415-8334
                http://orcid.org/0000-0002-2405-4404
                http://orcid.org/0000-0002-8101-8370
                Article
                1485
                10.1038/s41467-017-01485-5
                5700061
                29167428
                69d6fce2-84ce-4dcb-9b24-39a2950abae6
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 31 January 2017
                : 19 September 2017
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