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      Altered native stability is the dominant basis for susceptibility of α 1-antitrypsin mutants to polymerization

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          Abstract

          Serpins are protease inhibitors whose most stable state is achieved upon transition of a central 5-stranded β-sheet to a 6-stranded form. Mutations, low pH, denaturants and elevated temperatures promote this transition, which can result in a growing polymer chain of inactive molecules. Different types of polymer are possible, but, experimentally only heat has been shown to generate polymers in vitro consistent with ex vivo pathological specimens. Many mutations that alter the rate of heat-induced polymerization have been described, but interpretation is problematic because discrimination is lacking between the effect of global changes in native stability and specific effects on structural mechanism. We show that the temperature midpoint ( T m) of thermal denaturation reflects the transition of α 1-antitrypsin to the polymerization intermediate, and determine the relationship with fixed-temperature polymerization half-times ( t 0.5) in the presence of stabilizing additives [TMAO (trimethylamine N-oxide), sucrose and sodium sulfate], point mutations and disulfide bonds. Combined with a retrospective analysis of 31 mutants characterized in the literature, the results of the present study show that global changes to native state stability are the predominant basis for the effects of mutations and osmolytes on heat-induced polymerization, summarized by the equation: ln( t 0.5,mutant/ t 0.5,wild-type)=0.34×Δ T m. It is deviations from this relationship that hold key information about the polymerization process.

          Abstract

          Mutations in α 1-antitrypsin increase or decrease its tendency to form pathogenic ordered polymer chains. The present study shows that these effects are primarily exerted through changes in native state stability, and seldom through direct effects on the polymerization mechanism.

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          Most cited references50

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          Principles that govern the folding of protein chains.

          C ANFINSEN (1973)
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            Quick measurement of protein sulfhydryls with Ellman's reagent and with 4,4'-dithiodipyridine.

            Since its introduction in 1959, Ellman's reagent (5,5'-dithio-bis(2-nitrobenzoic acid)) has been the favorite reagent for spectrophotometric measurement of protein sulfhydryls. Meanwhile however, evidence has accumulated that many protein sulfhydryls give an incomplete reaction with Ellman's reagent, even during prolonged assay times. In the present study, the kinetic problem was solved by including cystamine as a "mediator" between the protein sulfhydryl and Ellman's reagent, as previously applied in an enzymatic thiol assay [9]. As an alternative, 4,4'-dithiodipyridine (DTDP) was used in place of Ellman's reagent. Due to its small size, amphiphilic nature, and lack of charge, DTDP quickly reacts with poorly accessible protein sulfhydryls, without any catalysis by cystamine. The DTDP method and the Ellman/cystamine method were both optimized for maximal sensitivity, minimal sample consumption (detection limit 0.2 nmol mL(-1), determination limit 0.6 nmol mL(-1)), and minimal assay time (5 min). In validation experiments, both methods gave identical results and the measured sulfhydryls/protein matched the expected values. Electronic supplementary material to this paper can be obtained by using the Springer Link server located at http://dx.doi.org/10.1007/s00216-002-1347-2.
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              Protein kinetic stability.

              The relevance of protein stability for biological function and molecular evolution is widely recognized. Protein stability, however, comes in two flavours: thermodynamic stability, which is related to a low amount of unfolded and partially-unfolded states in equilibrium with the native, functional protein; kinetic stability, which is related to a high free-energy barrier "separating" the native state from the non-functional forms (unfolded states, irreversibly-denatured protein). Such barrier may guarantee that the biological function of the protein is maintained, at least during a physiologically relevant time-scale, even if the native state is not thermodynamically stable with respect to non-functional forms. Kinetic stabilization is likely required in many cases, since proteins often work under conditions (harsh extracellular or crowded intracellular environments) in which deleterious alterations (proteolysis, aggregation, undesirable interactions with other macromolecular components) are prone to occur. Also, kinetic stability may provide a mechanism for the evolution of optimal functional properties. Furthermore, enhancement of kinetic stability is essential for many biotechnological applications of proteins. Despite all this, many published studies focus on thermodynamic stability, partly because it can be easily quantified in vitro for small model proteins and, also, because of the availability of computational algorithms to estimate mutation effects on thermodynamic stability. In this review, the opposite bias is purposely adopted: the experimental evidence supporting widespread kinetic stabilization of proteins is summarized, the role of natural selection in determining this feature is discussed, possible molecular mechanisms responsible for kinetic stability are described and the relation between kinetic destabilization and protein misfolding diseases is highlighted.
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                Author and article information

                Journal
                Biochem J
                Biochem. J
                bic
                BJ
                Biochemical Journal
                Portland Press Ltd.
                0264-6021
                1470-8728
                20 February 2014
                25 April 2014
                15 May 2014
                : 460
                : Pt 1
                : 103-115
                Affiliations
                *Cambridge Institute for Medical Research, Department of Medicine, University of Cambridge, Wellcome Trust/MRC Building, Hills Road, Cambridge CB2 0XY, U.K.
                †Wolfson Institute for Biomedical Research, The Cruciform Building, University College London, Gower Street, London WC1E 6BT, U.K.
                Author notes

                1These authors contributed equally to this work.

                2To whom correspondence should be addressed at the present address: Wolfson Institute for Biomedical Research, The Cruciform Building, University College London, Gower Street, London WC1E 6BT, U.K. (email j.irving@ 123456ucl.ac.uk ).
                Article
                BJ20131650
                10.1042/BJ20131650
                4080824
                24552432
                6b912be1-b114-4449-a8b0-965bc6cba604
                © 2014 This is an Open Access article distributed under the terms of the Creative Commons Attribution Licence (CC-BY)(http://creativecommons.org/licenses/by/3.0/) which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 16 December 2013
                : 13 February 2014
                : 20 February 2014
                Page count
                Figures: 6, Tables: 4, Equations: 4, References: 62, Pages: 13
                Categories
                Research Article

                Biochemistry
                cirrhosis,denaturation,disulfide,polymerization,serpin,stability,bis-ans, 4,4′-dianilino-1,1′-binaphthyl-5,5′-disulfonic acid,hrp, horseradish peroxide,ni-nta, ni2+-nitrilotriacetic acid,rcl, reactive centre loop,tmao, trimethylamine n-oxide

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