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      Leaf epidermal micromorphology defining the clades in Cinnamomum (Lauraceae)

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          Abstract

          In this study, we sampled 48 species of Asian Cinnamomum covering the species groups that were identified in recent phylogenetic studies and conducted leaf micromorphological observations using both light microscopy (LM) and scanning electron microscopy (SEM). Synapomorphies were determined by means of mapping micromorphological characters on a phylogenetic tree. The results indicate that Cinnamomum exhibits two different types of leaf upper epidermis: Type I has smooth/non-reticulate periclinal walls whereas Type II has reticulate periclinal walls and is unusual in the family Lauraceae . We found that the two types of micromorphological characters are clade-specific, sect. Camphora s.s. possesses Type I leaf upper epidermis, and sect. Cinnamomum s.l. has Type II leaf upper epidermis. Our study also reveals that C. saxatile , a member of sect. Camphora s.l. in the traditional classification, actually has Type II leaf upper epidermis, thus reinforcing the result of a recent molecular phylogeny that has this species in a clade consisting mainly of species of sect. Cinnamomum .

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            MRBAYES: Bayesian inference of phylogenetic trees.

            The program MRBAYES performs Bayesian inference of phylogeny using a variant of Markov chain Monte Carlo. MRBAYES, including the source code, documentation, sample data files, and an executable, is available at http://brahms.biology.rochester.edu/software.html.
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              MRBAYES: Bayesian inference of phylogenetic trees

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                Author and article information

                Contributors
                Journal
                PhytoKeys
                PhytoKeys
                3
                urn:lsid:arphahub.com:pub:F7FCE910-8E78-573F-9C77-7788555F8AAD
                PhytoKeys
                Pensoft Publishers
                1314-2011
                1314-2003
                2021
                04 October 2021
                : 182
                : 125-148
                Affiliations
                [1 ] College of Biology and Environment, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, Jiangsu, China Institute of Botany, the Chinese Academy of Sciences Beijing China
                [2 ] State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, the Chinese Academy of Sciences, 20 Nanxincun, Xiangshan, Beijing 10093, China Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences Mengla China
                [3 ] Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla 666303, China Universität Hamburg Hamburg Germany
                [4 ] Universität Hamburg, Institute of Plant Science and Microbiology, Ohnhorststr. 18, 22609 Hamburg, Germany University of Vienna Vienna Austria
                [5 ] University of Vienna, Department of Paleontology, 1090 Vienna, Austria Nanjing Forestry University Vienna Austria
                Author notes
                Corresponding author: Yong Yang ( yangyong@ 123456njfu.edu.cn )

                Academic editor: Elton John de Lirio

                Author information
                https://orcid.org/0000-0002-6086-253X
                https://orcid.org/0000-0001-8560-9015
                https://orcid.org/0000-0001-7763-5133
                Article
                67289
                10.3897/phytokeys.182.67289
                8516828
                34720625
                6bea6782-55d2-4ec1-ba3b-7dab059beabd
                Zeng Gang, Bing Liu, Jens G. Rohwer, David Kay Ferguson, Yong Yang

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 April 2021
                : 07 September 2021
                Funding
                Funded by: National Natural Science Foundation of China 501100001809 http://doi.org/10.13039/501100001809
                Categories
                Research Article
                Lauraceae
                Taxonomy
                Cenozoic
                Asia

                Plant science & Botany
                anatomy,cinnamomum,lauraceae,scanning electron microscope (sem),systematics
                Plant science & Botany
                anatomy, cinnamomum, lauraceae, scanning electron microscope (sem), systematics

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