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      Cryptic species diversity in the Hypsolebiasmagnificus complex, a clade of endangered seasonal killifishes from the São Francisco River basin, Brazilian Caatinga (Cyprinodontiformes, Aplocheilidae)

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          Abstract

          Abstract

          A great diversity of animal species adapted to life in the semi-arid Caatinga of northeastern Brazil, including seasonal killifishes, has been reported in the last three decades. More recently, field and molecular data have shown a high occurrence of cryptic species. The killifish group herein analysed, the Hypsolebias magnificus species complex, is endemic to the middle and southern portion of the Caatinga, occupying about 120 km along the floodplains of the middle São Francisco River and some adjacent tributaries. Species of this complex are rare and presently considered threatened with extinction, being uniquely found in pools protected by trees and bushes. Single-locus delimitation methods were used to test species limits of populations displaying different colour patterns along the whole distribution of the complex. All analyses consistently supported the three nominal species and two new, herein described: H. gardneri Costa, sp. n., from the floodplains of the middle São Francisco River and H. hamadryades Costa, sp. n., from the Gorotuba River floodplains. The phylogenetic analysis highly supports H. hamadryades as sister to a clade comprising H. gardneri and H. harmonicus . Our field observations suggest that H. hamadryades is a miniature species. This study indicates that the H. magnificus complex comprises cryptic species apparently endemic to small areas and extremely vulnerable to environmental changes, deserving high concern.

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          Most cited references16

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          Multiple sequence alignment with the Clustal series of programs.

          R Chenna (2003)
          The Clustal series of programs are widely used in molecular biology for the multiple alignment of both nucleic acid and protein sequences and for preparing phylogenetic trees. The popularity of the programs depends on a number of factors, including not only the accuracy of the results, but also the robustness, portability and user-friendliness of the programs. New features include NEXUS and FASTA format output, printing range numbers and faster tree calculation. Although, Clustal was originally developed to run on a local computer, numerous Web servers have been set up, notably at the EBI (European Bioinformatics Institute) (http://www.ebi.ac.uk/clustalw/).
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            Cryptic species as a window on diversity and conservation.

            The taxonomic challenge posed by cryptic species (two or more distinct species classified as a single species) has been recognized for nearly 300 years, but the advent of relatively inexpensive and rapid DNA sequencing has given biologists a new tool for detecting and differentiating morphologically similar species. Here, we synthesize the literature on cryptic and sibling species and discuss trends in their discovery. However, a lack of systematic studies leaves many questions open, such as whether cryptic species are more common in particular habitats, latitudes or taxonomic groups. The discovery of cryptic species is likely to be non-random with regard to taxon and biome and, hence, could have profound implications for evolutionary theory, biogeography and conservation planning.
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              Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers.

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                Author and article information

                Contributors
                Journal
                Zookeys
                Zookeys
                ZooKeys
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2018
                30 July 2018
                : 777
                : 141-158
                Affiliations
                [1 ] Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, CEP 21941-971, Rio de Janeiro, Brazil Federal University of Rio de Janeiro Rio de Janeiro Brazil
                Author notes
                Corresponding author: Wilson J. E. M. Costa ( wcosta@ 123456acd.ufrj.br )

                Academic editor: D. Bloom

                Article
                10.3897/zookeys.777.25058
                6079103
                6c9f2ca9-ccc3-43fc-8418-69eb1637fce0
                Wilson J. E. M. Costa, Pedro F. Amorim, José Leonardo O. Mattos

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 14 March 2018
                : 19 June 2018
                Categories
                Research Article
                Aplocheilidae
                Cyprinodontiformes
                Systematics
                Taxonomy
                Brazil

                Animal science & Zoology
                biodiversity,conservation,molecular taxonomy,species delimitation,systematics,animalia,cyprinodontiformes,rivulidae

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