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      Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

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          Abstract

          Frankia sp. strain G2 was originally isolated from Casuarina equisetifolia and is characterized by its ability to nodulate actinorhizal plants of the Rhamnales order, but not its original host. It represents one of the largest Frankia genomes so far sequenced (9.5 Mbp).

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          Solexa Ltd.

          Simon Bennett (2004)
          Solexa Ltd is developing an integrated system, based on a breakthrough single molecule sequencing technology, to address a US$2 billion market that is expected to grow exponentially alongside and as a consequence of further technological enhancements. The system, software and consumables will initially be sold to research organizations, pharmaceutical companies and diagnostic companies that will sequence large regions of genomic DNA, including whole genomes, at costs several orders of magnitude below current levels. Solexa expects to launch its first product in 2006, and as it continues to make time and cost efficiencies, additional products will be launched into the expanding markets that will have broad applications in basic research through to healthcare management.
          Article 0 comments Cited 356 times – based on 0 reviews     Review now
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            IMG 4 version of the integrated microbial genomes comparative analysis system

            Victor Markowitz, I-Min Chen, Krishna Palaniappan … (2013)
            The Integrated Microbial Genomes (IMG) data warehouse integrates genomes from all three domains of life, as well as plasmids, viruses and genome fragments. IMG provides tools for analyzing and reviewing the structural and functional annotations of genomes in a comparative context. IMG’s data content and analytical capabilities have increased continuously since its first version released in 2005. Since the last report published in the 2012 NAR Database Issue, IMG’s annotation and data integration pipelines have evolved while new tools have been added for recording and analyzing single cell genomes, RNA Seq and biosynthetic cluster data. Different IMG datamarts provide support for the analysis of publicly available genomes (IMG/W: http://img.jgi.doe.gov/w), expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er) and teaching and training in the area of microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu).
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              The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

              T.B.K. Reddy, Alex D Thomas, Dimitri Stamatis … (2014)
              The Genomes OnLine Database (GOLD; http://www.genomesonline.org) is a comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad array of curated metadata. Here we report version 5 (v.5) of the database. The newly designed database schema and web user interface supports several new features including the implementation of a four level (meta)genome project classification system and a simplified intuitive web interface to access reports and launch search tools. The database currently hosts information for about 19 200 studies, 56 000 Biosamples, 56 000 sequencing projects and 39 400 analysis projects. More than just a catalog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse. The problems encountered in integrating disparate and varying quality data into GOLD are briefly highlighted. GOLD fully supports and follows the Genomic Standards Consortium (GSC) Minimum Information standards.
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                Author and article information

                Journal
                Journal ID (nlm-ta): Genome Announc
                Journal ID (iso-abbrev): Genome Announc
                Journal ID (hwp): ga
                Journal ID (pmc): ga
                Journal ID (publisher-id): GA
                Title: Genome Announcements
                Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )
                ISSN (Electronic): 2169-8287
                Publication date (Electronic): 26 May 2016
                Publication date Collection: May-Jun 2016
                Volume: 4
                Issue: 3
                Electronic Location Identifier: e00437-16
                Affiliations
                [a ]School of Biology, Newcastle University, Newcastle upon Tyne, United Kingdom
                [b ]University of Tunis-El Manar, Tunis, Tunisia
                [c ]Leibniz Institute-DSMZ, Braunschweig, Germany
                [d ]University of New Hampshire, Durham, New Hampshire, USA
                [e ]Université de Lyon, CNRS, Ecologie Microbienne, INRA, UMR1418, Villeurbanne, France
                [f ]DOE Joint Genome Institute, Walnut Creek, California, USA
                Author notes
                Address correspondence to Hans-Peter Klenk, hans-peter.klenk@ 123456ncl.ac.uk .
                Author information
                https://orcid.org/http://orcid.org/0000-0001-6758-8150
                Article
                Publisher ID: genomeA00437-16
                DOI: 10.1128/genomeA.00437-16
                PMC ID: 4882949
                PubMed ID: 27231368
                SO-VID: 6d18883a-3247-44e4-a140-0dc4045014d0
                Copyright statement: Copyright © 2016 Nouioui et al.
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                Date received : 9 April 2016
                Date accepted : 13 April 2016
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 34, Pages: 3, Words: 2512
                Product
                Funding
                Funded by: U.S. Department of Energy (DOE) http://dx.doi.org/10.13039/100000015
                Award ID: DE-AC02-05CH11231
                Award Recipient : Nikos C. Kyrpides
                Categories
                Subject: Prokaryotes
                Custom metadata
                cover-date May/June 2016

                ScienceOpen disciplines: Genetics
                Data availability:
                ScienceOpen disciplines: Genetics

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