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      The CoQ oxidoreductase FSP1 acts in parallel to GPX4 to inhibit ferroptosis

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          Abstract

          Ferroptosis is a form of regulated cell death that is caused by the iron-dependent peroxidation of lipids 1, 2 . The glutathione-dependent lipid hydroperoxidase glutathione peroxidase 4 (GPX4) prevents ferroptosis by converting lipid hydroperoxides into non-toxic lipid alcohols 3, 4 . Ferroptosis has been implicated in the cell death that underlies several degenerative conditions 2 , and induction of ferroptosis by inhibition of GPX4 has emerged as a therapeutic strategy to trigger cancer cell death 5 . However, sensitivity to GPX4 inhibitors varies greatly across cancer cell lines 6 , suggesting that additional factors govern resistance to ferroptosis. Here, employing a synthetic lethal CRISPR/Cas9 screen, we identify ferroptosis suppressor protein 1 (FSP1) (previously known as apoptosis-inducing factor mitochondrial 2 (AIFM2)) as a potent ferroptosis resistance factor. Our data indicate that myristoylation recruits FSP1 to the plasma membrane where it functions as an oxidoreductase that reduces coenzyme Q10 (CoQ), generating a lipophilic radical-trapping antioxidant (RTA) that halts the propagation of lipid peroxides. We further find that FSP1 expression positively correlates with ferroptosis resistance across hundreds of cancer cell lines, and that FSP1 mediates resistance to ferroptosis in lung cancer cells in culture and in mouse tumor xenografts. Thus, our data identify FSP1 as a key component of a non-mitochondrial CoQ antioxidant system that acts in parallel to the canonical glutathione-based GPX4 pathway. These findings define a new ferroptosis suppression pathway and indicate that pharmacological inhibition of FSP1 may provide an effective strategy to sensitize cancer cells to ferroptosis-inducing chemotherapeutics.

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          Dependency of a therapy-resistant state of cancer cells on a lipid peroxidase pathway

          Plasticity of the cell state has been proposed to drive resistance to multiple classes of cancer therapies, thereby limiting their effectiveness. A high-mesenchymal cell state observed in human tumours and cancer cell lines has been associated with resistance to multiple treatment modalities across diverse cancer lineages, but the mechanistic underpinning for this state has remained incompletely understood. Here we molecularly characterize this therapy-resistant high-mesenchymal cell state in human cancer cell lines and organoids and show that it depends on a druggable lipid-peroxidase pathway that protects against ferroptosis, a non-apoptotic form of cell death induced by the build-up of toxic lipid peroxides. We show that this cell state is characterized by activity of enzymes that promote the synthesis of polyunsaturated lipids. These lipids are the substrates for lipid peroxidation by lipoxygenase enzymes. This lipid metabolism creates a dependency on pathways converging on the phospholipid glutathione peroxidase (GPX4), a selenocysteine-containing enzyme that dissipates lipid peroxides and thereby prevents the iron-mediated reactions of peroxides that induce ferroptotic cell death. Dependency on GPX4 was found to exist across diverse therapy-resistant states characterized by high expression of ZEB1, including epithelial–mesenchymal transition in epithelial-derived carcinomas, TGFβ-mediated therapy-resistance in melanoma, treatment-induced neuroendocrine transdifferentiation in prostate cancer, and sarcomas, which are fixed in a mesenchymal state owing to their cells of origin. We identify vulnerability to ferroptic cell death induced by inhibition of a lipid peroxidase pathway as a feature of therapy-resistant cancer cells across diverse mesenchymal cell-state contexts.
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            Selenium Utilization by GPX4 Is Required to Prevent Hydroperoxide-Induced Ferroptosis.

            Selenoproteins are rare proteins among all kingdoms of life containing the 21st amino acid, selenocysteine. Selenocysteine resembles cysteine, differing only by the substitution of selenium for sulfur. Yet the actual advantage of selenolate- versus thiolate-based catalysis has remained enigmatic, as most of the known selenoproteins also exist as cysteine-containing homologs. Here, we demonstrate that selenolate-based catalysis of the essential mammalian selenoprotein GPX4 is unexpectedly dispensable for normal embryogenesis. Yet the survival of a specific type of interneurons emerges to exclusively depend on selenocysteine-containing GPX4, thereby preventing fatal epileptic seizures. Mechanistically, selenocysteine utilization by GPX4 confers exquisite resistance to irreversible overoxidation as cells expressing a cysteine variant are highly sensitive toward peroxide-induced ferroptosis. Remarkably, concomitant deletion of all selenoproteins in Gpx4cys/cys cells revealed that selenoproteins are dispensable for cell viability provided partial GPX4 activity is retained. Conclusively, 200 years after its discovery, a specific and indispensable role for selenium is provided.
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              Correlating chemical sensitivity and basal gene expression reveals mechanism of action

              Changes in cellular gene expression in response to small-molecule or genetic perturbations have yielded signatures that can connect unknown mechanisms of action (MoA) to ones previously established. We hypothesized that differential basal gene expression could be correlated with patterns of small-molecule sensitivity across many cell lines to illuminate the actions of compounds whose MoA are unknown. To test this idea, we correlated the sensitivity patterns of 481 compounds with ~19,000 basal transcript levels across 823 different human cancer cell lines and identified selective outlier transcripts. This process yielded many novel mechanistic insights, including the identification of activation mechanisms, cellular transporters, and direct protein targets. We found that ML239, originally identified in a phenotypic screen for selective cytotoxicity in breast cancer stem-like cells, most likely acts through activation of fatty acid desaturase 2 (FADS2). These data and analytical tools are available to the research community through the Cancer Therapeutics Response Portal.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                4 October 2019
                21 October 2019
                November 2019
                21 April 2020
                : 575
                : 7784
                : 688-692
                Affiliations
                [1 ]Department of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley, CA 94720 USA
                [2 ]Department of Biology, Stanford University, Stanford, CA 94305 USA
                [3 ]Department of Chemistry, University of California, Berkeley, Berkeley, CA 94720 USA
                [4 ]Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720 USA
                [5 ]Department of Pathology and Laboratory Medicine, Cincinnati Children's Hospital Medical Center and University of Cincinnati College of Medicine, Cincinnati, OH 45229 USA
                [6 ]Department of Genetics and Stanford University Chemistry, Engineering and Medicine for Human Health (ChEM-H), Stanford University School of Medicine, Stanford, CA 94305 USA
                [7 ]Chan Zuckerberg Biohub, San Francisco, CA 94720 USA
                Author notes
                [* ]Address correspondence to: James A. Olzmann, Morgan Hall Room 129, Department of Nutritional Sciences and Toxicology, University of California, Berkeley, Berkeley CA 94720-3104 USA, olzmann@ 123456berkeley.edu , Phone: +1-510-642-1053

                AUTHOR CONTRIBUTIONS

                K.B. and J.A.O. conceived of the project and designed the experiments. J.A.O. and K.B. wrote the manuscript. All authors read and edited the manuscript. K.B. performed the majority of the experiments. Z.L. and M.A.R. performed and analyzed the CRISPR screen with guidance from M.C.B. K.B. prepared samples and R.Z. performed the TIRF microscopy, B.F. performed the lipidomics, and P.H.T. measured CoQ levels and redox state. J.H. performed the click chemistry myristoylation experiments. S.J.D. and L.M. performed the glutathione measurements and C11 experiments. J.H. generated the overexpression and knockout lung cancer lines and analyzed ferroptosis in these lines. D.K.N., J.H., B.F., and M.A.R. performed the xenograft experiments. T.J.M. and B.T. synthesized IKE.

                Article
                NIHMS1540825
                10.1038/s41586-019-1705-2
                6883167
                31634900
                6d670161-0642-4764-9c16-f7214652468a

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