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      Mutation of the Diamond-Blackfan Anemia Gene Rps7 in Mouse Results in Morphological and Neuroanatomical Phenotypes

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          Abstract

          The ribosome is an evolutionarily conserved organelle essential for cellular function. Ribosome construction requires assembly of approximately 80 different ribosomal proteins (RPs) and four different species of rRNA. As RPs co-assemble into one multi-subunit complex, mutation of the genes that encode RPs might be expected to give rise to phenocopies, in which the same phenotype is associated with loss-of-function of each individual gene. However, a more complex picture is emerging in which, in addition to a group of shared phenotypes, diverse RP gene-specific phenotypes are observed. Here we report the first two mouse mutations ( Rps7 Mtu and Rps7 Zma ) of ribosomal protein S7 ( Rps7), a gene that has been implicated in Diamond-Blackfan anemia. Rps7 disruption results in decreased body size, abnormal skeletal morphology, mid-ventral white spotting, and eye malformations. These phenotypes are reported in other murine RP mutants and, as demonstrated for some other RP mutations, are ameliorated by Trp53 deficiency. Interestingly, Rps7 mutants have additional overt malformations of the developing central nervous system and deficits in working memory, phenotypes that are not reported in murine or human RP gene mutants. Conversely, Rps7 mouse mutants show no anemia or hyperpigmentation, phenotypes associated with mutation of human RPS7 and other murine RPs, respectively. We provide two novel RP mouse models and expand the repertoire of potential phenotypes that should be examined in RP mutants to further explore the concept of RP gene-specific phenotypes.

          Author Summary

          Ribosomes are composed of two subunits that each consist of a large number of proteins, and their function of translating mRNA into protein is essential for cell viability. Naturally occurring or genetically engineered mutations within an individual ribosomal protein provide a valuable resource, since the resulting abnormal phenotypes reveal the function of each ribosomal protein. A number of mutations recently identified in mammalian ribosomal subunit genes have confirmed that homozygous loss of function consistently results in lethality; however, haploinsufficiency causes a variety of tissue-specific phenotypes. In this paper, we describe the first mutant alleles of the gene encoding ribosomal protein S7 ( Rps7) in mouse. Rps7 haploinsufficiency causes decreased size, abnormal skeletal morphology, mid-ventral white spotting, and eye malformations, phenotypes that also occur with haploinsufficiency for other ribosomal subunits. Additionally, significant apoptosis occurs within the developing central nervous system (CNS) along with subtle behavioral phenotypes, suggesting RPS7 is required for CNS development. Mutation of human RPS7 has been implicated in Diamond-Blackfan anemia (DBA), yet the murine alleles do not present an analogous phenotype. The phenotypes we observe in the Rps7 mouse mutants indicate RPS7 should be considered as a candidate for a broader spectrum of human diseases.

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          Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.

          The effect of genetic mutation on phenotype is of significant interest in genetics. The type of genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is called a non-synonymous single nucleotide polymorphism (nsSNP). An nsSNP could potentially affect the function of the protein, subsequently altering the carrier's phenotype. This protocol describes the use of the 'Sorting Tolerant From Intolerant' (SIFT) algorithm in predicting whether an AAS affects protein function. To assess the effect of a substitution, SIFT assumes that important positions in a protein sequence have been conserved throughout evolution and therefore substitutions at these positions may affect protein function. Thus, by using sequence homology, SIFT predicts the effects of all possible substitutions at each position in the protein sequence. The protocol typically takes 5-20 min, depending on the input. SIFT is available as an online tool (http://sift.jcvi.org).
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            The multifunctional nucleolus.

            The nucleolus is a distinct subnuclear compartment that was first observed more than 200 years ago. Nucleoli assemble around the tandemly repeated ribosomal DNA gene clusters and 28S, 18S and 5.8S ribosomal RNAs (rRNAs) are transcribed as a single precursor, which is processed and assembled with the 5S rRNA into ribosome subunits. Although the nucleolus is primarily associated with ribosome biogenesis, several lines of evidence now show that it has additional functions. Some of these functions, such as regulation of mitosis, cell-cycle progression and proliferation, many forms of stress response and biogenesis of multiple ribonucleoprotein particles, will be discussed, as will the relation of the nucleolus to human diseases.
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              The PredictProtein server.

              PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Genet
                PLoS Genet
                plos
                plosgen
                PLoS Genetics
                Public Library of Science (San Francisco, USA )
                1553-7390
                1553-7404
                January 2013
                January 2013
                31 January 2013
                : 9
                : 1
                : e1003094
                Affiliations
                [1 ]National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America
                [2 ]Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom
                [3 ]Institute of Molecular Pathology, Vienna, Austria
                [4 ]Department of Biology, University of Rome Tor Vergata, Roma, Italy
                [5 ]Institut Cochin, Université Paris Descartes, CNRS (UMR 8104), Paris, France
                [6 ]National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland, United States of America
                [7 ]Centre for Advanced Biomedical Imaging, Department of Medicine and Institute of Child Health, University College London, London, United Kingdom
                [8 ]Early Mammalian Development Laboratory, Research School of Biology, College of Medicine, Biology, and Environment, Australian National University, Canberra, Australia
                Stanford University School of Medicine, United States of America
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: DE Watkins-Chow, RM Arkell, F Loreni, J Flint, WJ Pavan, DA Keays. Performed the experiments: DE Watkins-Chow, J Cooke, R Pidsley, A Edwards, R Slotkin, KE Leeds, R Mullen, TG Campbell, MC Salzer, L Biondini, G Gibney, F Phan Dinh Tuy, HD Morris, RM Arkell, DA Keays. Analyzed the data: DE Watkins-Chow, J Cooke, LL Baxter, G Gibney, J Riegler, MF Lythgoe, RM Arkell, F Loreni, DA Keays. Contributed reagents/materials/analysis tools: J Chelly. Wrote the paper: DE Watkins-Chow, LL Baxter, RM Arkell, F Loreni, WJ Pavan, DA Keays.

                Article
                PGENETICS-D-11-01191
                10.1371/journal.pgen.1003094
                3561062
                23382688
                6e4eb0ef-a3c7-4e6e-a8a7-ea3a254e6b3e
                Copyright @ 2013

                This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 7 June 2011
                : 30 September 2012
                Page count
                Pages: 17
                Funding
                This research was supported in part by the Intramural Research Program of NHGRI, NIH, and the Wellcome Trust and by NHMRC Australia grant 366746. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology
                Genetics
                Genetic Mutation
                Mutagenesis
                Gene Function
                Genetic Screens
                Genetics of Disease
                Neuroscience
                Cognitive Neuroscience
                Working Memory
                Developmental Neuroscience
                Neurogenesis
                Animal Cognition
                Behavioral Neuroscience

                Genetics
                Genetics

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