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      The PredictProtein server.

      Nucleic Acids Research

      Internet, Protein Conformation, Protein Structure, Tertiary, Proteins, chemistry, physiology, Sequence Alignment, Sequence Analysis, Protein, Software, User-Computer Interface

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          Abstract

          PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.

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          Author and article information

          Journal
          15215403
          441515
          10.1093/nar/gkh377

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