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      Beyond the Colours: Discovering Hidden Diversity in the Nymphalidae of the Yucatan Peninsula in Mexico through DNA Barcoding

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          Abstract

          Background

          Recent studies have demonstrated the utility of DNA barcoding in the discovery of overlooked species and in the connection of immature and adult stages. In this study, we use DNA barcoding to examine diversity patterns in 121 species of Nymphalidae from the Yucatan Peninsula in Mexico. Our results suggest the presence of cryptic species in 8 of these 121 taxa. As well, the reference database derived from the analysis of adult specimens allowed the identification of nymphalid caterpillars providing new details on host plant use.

          Methodology/Principal Findings

          We gathered DNA barcode sequences from 857 adult Nymphalidae representing 121 different species. This total includes four species ( Adelpha iphiclus, Adelpha malea, Hamadryas iphtime and Taygetis laches) that were initially overlooked because of their close morphological similarity to other species. The barcode results showed that each of the 121 species possessed a diagnostic array of barcode sequences. In addition, there was evidence of cryptic taxa; seven species included two barcode clusters showing more than 2% sequence divergence while one species included three clusters. All 71 nymphalid caterpillars were identified to a species level by their sequence congruence to adult sequences. These caterpillars represented 16 species, and included Hamadryas julitta, an endemic species from the Yucatan Peninsula whose larval stages and host plant ( Dalechampia schottii, also endemic to the Yucatan Peninsula) were previously unknown.

          Conclusions/Significance

          This investigation has revealed overlooked species in a well-studied museum collection of nymphalid butterflies and suggests that there is a substantial incidence of cryptic species that await full characterization. The utility of barcoding in the rapid identification of caterpillars also promises to accelerate the assembly of information on life histories, a particularly important advance for hyperdiverse tropical insect assemblages.

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          Most cited references39

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          An inexpensive, automation-friendly protocol for recovering high-quality DNA

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            DNA barcodes for 1/1000 of the animal kingdom

            This study reports DNA barcodes for more than 1300 Lepidoptera species from the eastern half of North America, establishing that 99.3 per cent of these species possess diagnostic barcode sequences. Intraspecific divergences averaged just 0.43 per cent among this assemblage, but most values were lower. The mean was elevated by deep barcode divergences (greater than 2%) in 5.1 per cent of the species, often involving the sympatric occurrence of two barcode clusters. A few of these cases have been analysed in detail, revealing species overlooked by the current taxonomic system. This study also provided a large-scale test of the extent of regional divergence in barcode sequences, indicating that geographical differentiation in the Lepidoptera of eastern North America is small, even when comparisons involve populations as much as 2800 km apart. The present results affirm that a highly effective system for the identification of Lepidoptera in this region can be built with few records per species because of the limited intra-specific variation. As most terrestrial and marine taxa are likely to possess a similar pattern of population structure, an effective DNA-based identification system can be developed with modest effort.
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              Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding.

              By facilitating bioliteracy, DNA barcoding has the potential to improve the way the world relates to wild biodiversity. Here we describe the early stages of the use of cox1 barcoding to supplement and strengthen the taxonomic platform underpinning the inventory of thousands of sympatric species of caterpillars in tropical dry forest, cloud forest and rain forest in northwestern Costa Rica. The results show that barcoding a biologically complex biota unambiguously distinguishes among 97% of more than 1000 species of reared Lepidoptera. Those few species whose barcodes overlap are closely related and not confused with other species. Barcoding also has revealed a substantial number of cryptic species among morphologically defined species, associated sexes, and reinforced identification of species that are difficult to distinguish morphologically. For barcoding to achieve its full potential, (i) ability to rapidly and cheaply barcode older museum specimens is urgent, (ii) museums need to address the opportunity and responsibility for housing large numbers of barcode voucher specimens, (iii) substantial resources need be mustered to support the taxonomic side of the partnership with barcoding, and (iv) hand-held field-friendly barcorder must emerge as a mutualism with the taxasphere and the barcoding initiative, in a manner such that its use generates a resource base for the taxonomic process as well as a tool for the user.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                23 November 2011
                : 6
                : 11
                : e27776
                Affiliations
                [1 ]El Colegio de la Frontera Sur, Unidad Chetumal, Quintana Roo, Mexico
                [2 ]Biodiversity Institute of Ontario, University of Guelph, Ontario, Canada
                University of Guelph, Canada
                Author notes

                Conceived and designed the experiments: BP CP MV-M PH. Performed the experiments: BP. Analyzed the data: BP CP MV-M PH. Contributed reagents/materials/analysis tools: PH. Wrote the paper: BP CP MV-M PH.

                Article
                PONE-D-11-16160
                10.1371/journal.pone.0027776
                3223209
                22132140
                6f06546d-cb52-48d7-af53-17a6af2738ac
                Prado et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 18 August 2011
                : 25 October 2011
                Page count
                Pages: 11
                Categories
                Research Article
                Biology
                Ecology
                Ecological Metrics
                Species Diversity
                Species Richness
                Biodiversity
                Evolutionary Biology
                Evolutionary Systematics
                Taxonomy
                Animal Taxonomy
                Zoology
                Animal Taxonomy
                Entomology

                Uncategorized
                Uncategorized

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