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      Time-resolved proximity proteomics uncovers a membrane tension-sensitive caveolin-1 interactome at the rear of migrating cells

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          Abstract

          Caveolae are small membrane pits with fundamental roles in mechanotransduction. Several studies have shown that caveolae flatten out in response to increased membrane tension, thereby acting as a mechanosensitive membrane reservoir that buffers acute mechanical stress. Caveolae have also been implicated in the control of RhoA/ROCK-mediated actomyosin contractility at the rear of migrating cells. However, how membrane tension controls the organisation of caveolae and their role in mechanotransduction remains unclear. To address this, we systematically quantified protein–protein interactions of caveolin-1 in migrating RPE1 cells at steady state and in response to an acute increase in membrane tension using biotin-based proximity labelling and quantitative mass spectrometry. Our data show that caveolae are highly enriched at the rear of migrating RPE1 cells and that membrane tension rapidly and reversibly disrupts the caveolar protein coat. Membrane tension also detaches caveolin-1 from focal adhesion proteins and several mechanosensitive regulators of cortical actin including filamins and cortactin. In addition, we present evidence that ROCK and the RhoGAP ARHGAP29 associate with caveolin-1 in a manner dependent on membrane tension, with ARHGAP29 influencing caveolin-1 Y14 phosphorylation, caveolae rear localisation, and RPE1 cell migration. Taken together, our work uncovers a membrane tension-sensitive coupling between caveolae and the rear-localised F-actin cytoskeleton. This provides a framework for dissecting the molecular mechanisms underlying caveolae-regulated mechanotransduction pathways.

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          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            NIH Image to ImageJ: 25 years of image analysis

            For the past twenty five years the NIH family of imaging software, NIH Image and ImageJ have been pioneers as open tools for scientific image analysis. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.
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              Directed evolution of APEX2 for electron microscopy and proteomics

              APEX is an engineered peroxidase that functions both as an electron microscopy tag, and as a promiscuous labeling enzyme for live-cell proteomics. Because the limited sensitivity of APEX precludes applications requiring low APEX expression, we used yeast display evolution to improve its catalytic efficiency. Our evolved APEX2 is far more active in cells, enabling the superior enrichment of endogenous mitochondrial and endoplasmic reticulum membrane proteins and the use of electron microscopy to resolve the sub-mitochondrial localization of calcium uptake regulatory protein MICU1.
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                Author and article information

                Contributors
                Role: Reviewing Editor
                Role: Senior Editor
                Journal
                eLife
                Elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                24 September 2024
                2024
                : 13
                : e85601
                Affiliations
                [1 ] School of Biological Sciences, Nanyang Technological University ( https://ror.org/02e7b5302) Singapore Singapore
                [2 ] NTU Institute of Structural Biology (NISB), Nanyang Technological University ( https://ror.org/02e7b5302) Singapore Singapore
                [3 ] Proteomics of Cellular Signaling, Luxembourg Institute of Health ( https://ror.org/012m8gv78) Strassen Luxembourg
                [4 ] Department of Life Sciences and Medicine, University of Luxembourg ( https://ror.org/036x5ad56) Esch-sur-Alzette Luxembourg
                Institut de Biologie du Développement ( https://ror.org/02me5cy06) France
                Fred Hutchinson Cancer Research Center ( https://ror.org/007ps6h72) United States
                Institut de Biologie du Développement ( https://ror.org/02me5cy06) France
                Institut de Biologie du Développement ( https://ror.org/02me5cy06) France
                University of Manchester ( https://ror.org/027m9bs27) United Kingdom
                Author notes
                [†]

                These authors contributed equally to this work.

                Author information
                https://orcid.org/0000-0003-4707-697X
                https://orcid.org/0000-0001-8605-6037
                https://orcid.org/0000-0003-3647-8623
                https://orcid.org/0000-0002-0696-5298
                Article
                85601
                10.7554/eLife.85601
                11509677
                39315773
                6f703dc6-85c2-4c09-9b36-6d85f25339ac
                © 2024, Martin, Girardello et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 15 December 2022
                : 23 September 2024
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100001866, Fonds National de la Recherche Luxembourg;
                Award ID: 11823257
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/501100001475, Nanyang Technological University;
                Award ID: Start-up
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Cell Biology
                Custom metadata
                Membrane tension controls the dynamic assembly and disassembly of caveolae and their association with the F-actin cortex in migrating cells.

                Life sciences
                caveolae,caveolin-1,proximity proteomics,apex2,cell migration,membrane tension,mechanobiology,cavin,human

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