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      Reply to Tournier, “Pandemic Legion History More Complex than Previously Thought”

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      mBio
      American Society for Microbiology

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          Abstract

          REPLY We thank Dr. Tournier for his comments, which highlight the importance of using modern tools and modern knowledge to look backwards in time to try to understand new disease emergences. We want to emphasize for readers that we neither believe nor meant to imply that phylogenetic dating of viruses and bacteria strictly reflects what is referred to as “emergence.” It is accepted, for example, that the first human infections with HIV probably occurred at some time between the late 1800s and early 1900s, and yet we date the emergence of HIV/AIDS to 1981, when the disease was first recognized clinically and epidemiologically (1), reflecting understanding of the different meanings of the terms “disease emergence” and “microbial origin.” It was surely an analogous situation with ancient diseases, because it takes time, sometimes long periods, for host-switched infections to actually emerge as epidemic or pandemic diseases. In man’s hunter-gatherer days, before about 12,000 years ago, humans lived in very small clan groups without extensive or continual contact with other humans. Pandemicity and large-scale epidemicity were therefore impossible or delayed (2). We also underscore that we have never suggested that human tuberculosis was derived from bovine tuberculosis; in fact, newer data suggest multiple confusing possibilities for the origin of human Mycobacterium tuberculosis (3). In short, we have not taken positions on when organisms first infected humans and suggest only that the settling of humans into villages and cities facilitated the emergent spread of such organisms. Regarding the perpetually intriguing Plague of Athens (years 430 to 425 before the Common Era [BCE]), although we noted that other scholars have linked the disease to anthrax, we ourselves have never espoused this view, although we retain it as one of a number of possibilities (4). Clearly, the anthrax bacillus is an ancient organism; if it was the cause of the Plague of Athens, there is nothing to suggest that it emerged only in 430 BC. Indeed, common sense would suggest that it probably first infected humans long before. In our brief review, touching only tangentially on the subject of ancient disease origins, we repeated the conventional wisdom among anthropologists and historians that many important human diseases “emerged” during the Neolithic Revolution (2), a turning point at which some endemic diseases became epidemic or even pandemic. Going forward, it will be interesting to see whether, and to what extent, phylogenetic and other data converge or are at seeming odds with historical data, understanding that the age of the organism and the age of its emergence may in some cases be very different but in other cases less so. Such data for diseases such as measles, smallpox, and some others remain unresolved and even controversial but also create opportunities for scientists to examine and potentially clarify infectious disease history. In short, infectious organisms are ancient and initial human infectious with some of them probably occurred millennia ago, but in our view, emergence into recognized epidemic and pandemic disease in most cases could only have occurred after humans transitioned from hunter/gatherers into early civilizations.

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          Origins of HIV and the AIDS pandemic.

          Acquired immunodeficiency syndrome (AIDS) of humans is caused by two lentiviruses, human immunodeficiency viruses types 1 and 2 (HIV-1 and HIV-2). Here, we describe the origins and evolution of these viruses, and the circumstances that led to the AIDS pandemic. Both HIVs are the result of multiple cross-species transmissions of simian immunodeficiency viruses (SIVs) naturally infecting African primates. Most of these transfers resulted in viruses that spread in humans to only a limited extent. However, one transmission event, involving SIVcpz from chimpanzees in southeastern Cameroon, gave rise to HIV-1 group M-the principal cause of the AIDS pandemic. We discuss how host restriction factors have shaped the emergence of new SIV zoonoses by imposing adaptive hurdles to cross-species transmission and/or secondary spread. We also show that AIDS has likely afflicted chimpanzees long before the emergence of HIV. Tracing the genetic changes that occurred as SIVs crossed from monkeys to apes and from apes to humans provides a new framework to examine the requirements of successful host switches and to gauge future zoonotic risk.
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            Genomic insights into tuberculosis.

            Prevalent since pre-history, human tuberculosis - caused by the pathogen Mycobacterium tuberculosis - remains a major source of death worldwide. Moreover, increasing drug resistance poses the threat of disease resurgence. However, the expanding application of genomic techniques is providing new avenues for combating this old foe. Whole-genome sequencing, comparative genomics and systems biology are generating new insights into the origins and ongoing evolution of M. tuberculosis, as well as the molecular basis for its pathogenicity. These have important implications for our perspective of the disease, development of new drugs and vaccines, and treatment of patients using existing therapeutics.
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              Epidemiology of the Plague of Athens.

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                Author and article information

                Contributors
                Role: Editor
                Journal
                mBio
                mBio
                mbio
                mbio
                mBio
                mBio
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                2150-7511
                9 October 2020
                Sep-Oct 2020
                9 October 2020
                : 11
                : 5
                : e02654-20
                Affiliations
                [a ]Office of the Director, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA
                [b ]Viral Pathogenesis and Evolution Section, Laboratory of Infectious Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA
                Albert Einstein College of Medicine
                Author notes
                Address correspondence to Jeffery K. Taubenberger, taubenbergerj@ 123456niaid.nih.gov .
                Author information
                https://orcid.org/0000-0002-9694-7228
                Article
                mBio02654-20
                10.1128/mBio.02654-20
                7547205
                33037095
                7296035c-6066-45b8-8b30-4218fd267c9b

                This is a work of the U.S. Government and is not subject to copyright protection in the United States. Foreign copyrights may apply.

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                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 4, Pages: 2, Words: 820
                Funding
                Funded by: HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID), https://doi.org/10.13039/100000060;
                Award Recipient :
                Funded by: Division of Intramural Research, National Institute of Allergy and Infectious Diseases (DIR, NIAID), https://doi.org/10.13039/100006492;
                Award Recipient :
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                September/October 2020

                Life sciences
                Life sciences

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