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      Genome-Wide Meta-Analysis of Systolic Blood Pressure in Children with Sickle Cell Disease

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          Abstract

          In pediatric sickle cell disease (SCD) patients, it has been reported that higher systolic blood pressure (SBP) is associated with increased risk of a silent cerebral infarction (SCI). SCI is a major cause of neurologic morbidity in children with SCD, and blood pressure is a potential modulator of clinical manifestations of SCD; however, the risk factors underlying these complications are not well characterized. The aim of this study was to identify genetic variants that influence SBP in an African American population in the setting of SCD, and explore the use of SBP as an endo-phenotype for SCI. We conducted a genome-wide meta-analysis for SBP using two SCD cohorts, as well as a candidate screen based on published SBP loci. A total of 1,617 patients were analyzed, and while no SNP reached genome-wide significance (P-value<5.0x10 -8), a number of suggestive candidate loci were identified. The most significant SNP, rs7952106 (P-value=8.57x10 -7), was in the DRD2 locus on chromosome 11. In a gene-based association analysis, MIR4301 (micro-RNA4301), which resides in an intron of DRD2, was the most significant gene (P-value=5.2x10 -5). Examining 27 of the previously reported SBP associated SNPs, 4 SNPs were nominally significant. A genetic risk score was constructed to assess the aggregated genetic effect of the published SBP variants, demonstrating a significant association (P=0.05). In addition, we also assessed whether these variants are associated with SCI, validating the use of SBP as an endo-phenotype for SCI. Three SNPs were nominally associated, and only rs2357790 ( 5’ CACNB2) was significant for both SBP and SCI. None of these SNPs retained significance after Bonferroni correction. Taken together, our results suggest the importance of DRD2 genetic variation in the modulation of SBP, and extend the aggregated importance of previously reported SNPs in the modulation of SBP in an African American cohort, more specifically in children with SCD.

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          Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor.

          J. Duan (2003)
          Although changes in nucleotide sequence affecting the composition and the structure of proteins are well known, functional changes resulting from nucleotide substitutions cannot always be inferred from simple analysis of DNA sequence. Because a strong synonymous codon usage bias in the human DRD2 gene, suggesting selection on synonymous positions, was revealed by the relative independence of the G+C content of the third codon positions from the isochoric G+C frequencies, we chose to investigate functional effects of the six known naturally occurring synonymous changes (C132T, G423A, T765C, C939T, C957T, and G1101A) in the human DRD2. We report here that some synonymous mutations in the human DRD2 have functional effects and suggest a novel genetic mechanism. 957T, rather than being 'silent', altered the predicted mRNA folding, led to a decrease in mRNA stability and translation, and dramatically changed dopamine-induced up-regulation of DRD2 expression. 1101A did not show an effect by itself but annulled the above effects of 957T in the compound clone 957T/1101A, demonstrating that combinations of synonymous mutations can have functional consequences drastically different from those of each isolated mutation. C957T was found to be in linkage disequilibrium in a European-American population with the -141C Ins/Del and TaqI 'A' variants, which have been reported to be associated with schizophrenia and alcoholism, respectively. These results call into question some assumptions made about synonymous variation in molecular population genetics and gene-mapping studies of diseases with complex inheritance, and indicate that synonymous variation can have effects of potential pathophysiological and pharmacogenetic importance.
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            Genomewide association studies and human disease.

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              Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction

              QRS interval on the electrocardiogram reflects ventricular depolarization and conduction time, and is a risk factor for mortality, sudden death, and heart failure. We performed a genome-wide association meta-analysis in 40,407 European-descent individuals from 14 studies, with further genotyping in 7170 additional Europeans, and identified 22 loci associated with QRS duration (P < 5 × 10−8). These loci map in or near genes in pathways with established roles in ventricular conduction such as sodium channels, transcription factors, and calcium-handling proteins, but also point to novel biologic processes, such as kinase inhibitors and genes related to tumorigenesis. We demonstrate that SCN10A, a gene at our most significant locus, is expressed in the mouse ventricular conduction system, and treatment with a selective SCN10A blocker prolongs QRS duration. These findings extend our current knowledge of ventricular depolarization and conduction.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                13 September 2013
                : 8
                : 9
                : e74193
                Affiliations
                [1 ]McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
                [2 ]Department of Pediatrics, Division of Pediatric Hematology, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
                [3 ]Clinical and Molecular Hemostasis Laboratory Branch, Division of Blood Disorders, National Center on Birth Defects and Developmental Disabilities, Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America
                [4 ]Department of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, United States of America
                [5 ]Department of Medicine, Boston University School of Medicine, Boston, Massachusetts, United States of America
                [6 ]Department of Pediatrics, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America
                Leibniz-Institute for Arteriosclerosis Research at the University Muenster, Germany
                Author notes

                Competing Interests: James F. Casella has received an honorarium and travel expenses in the past and presently receives salary support through Johns Hopkins for providing consultative advice to Mast Therapeutics (previously called Adventrx Pharmaceuticals) regarding a proposed clinical trial of an agent for treating vaso-occlusive crisis in sickle cell disease. Dr. Casella is also listed as an inventor on a patent licensed to ImmunArray Corp. “Biomarkers of Brain Injury” (International Publication Number: WO 2012/051519) and one further pending patent. Dan Arking serves as a PLOS Editorial Board member. There are no further patents, products in development or marketed products to declare. This does not alter the authors' adherence to all the PLOS ONE policies on sharing data and materials.

                Conceived and designed the experiments: Participated in the conception, study design, and edited the manuscript: DEA JFC MDB MHS. Collected and prepared DNA for the GWAS, provided patient information and laboratory data for the SIT Trial cohort, and edited the manuscript: EBC. Performed stage 2 GWAS genotyping for the SIT Trial samples: CJB. Performed genotyping for the CSSCD cohort: CTB. Collected and managed the CSSCD database and genotyping results: JNM. Performed the statistical analysis: PB. Wrote the manuscript: PB DEA JFC MDB MHS.

                Article
                PONE-D-13-16790
                10.1371/journal.pone.0074193
                3772989
                24058526
                737afcc7-1fc3-402d-8053-2cc93693bcb4
                Copyright @ 2013

                This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 25 April 2013
                : 30 July 2013
                Funding
                This study was supported by the National Heart, Lung and Blood Institute (NHLBI) (Award Number: U54HL090515, 5R01HL091759) and the National Institute of Neurological Disorders and Stroke (NINDS) (NIH-NINDS 5U01-NS042804-03). This work was also supported by 5T32 HL007501 (J.N.M.) and R01 HL 87681, R01 068970 and RC2 HL 101212 (M.H.S.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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