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      A Rapid and Specific Assay for the Detection of MERS-CoV

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          Abstract

          Middle East respiratory syndrome coronavirus (MERS-CoV) is a novel human coronavirus that can cause human respiratory disease. The development of a detection method for this virus that can lead to rapid and accurate diagnosis would be significant. In this study, we established a nucleic acid visualization technique that combines the reverse transcription loop-mediated isothermal amplification technique and a vertical flow visualization strip (RT-LAMP-VF) to detect the N gene of MERS-CoV. The RT-LAMP-VF assay was performed in a constant temperature water bath for 30 min, and the result was visible by the naked eye within 5 min. The RT-LAMP-VF assay was capable of detecting 2 × 10 1 copies/μl of synthesized RNA transcript and 1 × 10 1 copies/μl of MERS-CoV RNA. The method exhibits no cross-reactivities with multiple CoVs including SARS-related (SARSr)-CoV, HKU4, HKU1, OC43 and 229E, and thus exhibits high specificity. Compared to the real-time RT-PCR (rRT-PCR) method recommended by the World Health Organization (WHO), the RT-LAMP-VF assay is easy to handle, does not require expensive equipment and can rapidly complete detection within 35 min.

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          Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia.

          A previously unknown coronavirus was isolated from the sputum of a 60-year-old man who presented with acute pneumonia and subsequent renal failure with a fatal outcome in Saudi Arabia. The virus (called HCoV-EMC) replicated readily in cell culture, producing cytopathic effects of rounding, detachment, and syncytium formation. The virus represents a novel betacoronavirus species. The closest known relatives are bat coronaviruses HKU4 and HKU5. Here, the clinical data, virus isolation, and molecular identification are presented. The clinical picture was remarkably similar to that of the severe acute respiratory syndrome (SARS) outbreak in 2003 and reminds us that animal coronaviruses can cause severe disease in humans.
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            Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation.

            The loop-mediated isothermal amplification (LAMP) is a novel nucleic acid amplification method that uses only one type of enzyme. One of the characteristics of the LAMP method is its ability to synthesize extremely large amount of DNA. Accordingly, a large amount of by-product, pyrophosphate ion, is produced, yielding white precipitate of magnesium pyrophosphate in the reaction mixture. Judging the presence or absence of this white precipitate allows easy distinction of whether nucleic acid was amplified by the LAMP method. Since an increase in the turbidity of the reaction mixture according to the production of precipitate correlates with the amount of DNA synthesized, real-time monitoring of the LAMP reaction was achieved by real-time measurement of turbidity. Copyright 2001 Academic Press.
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              Detection of a novel human coronavirus by real-time reverse-transcription polymerase chain reaction

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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                29 May 2018
                2018
                : 9
                : 1101
                Affiliations
                [1] 1Animal Science and Technology College, Jilin Agricultural University , Changchun, China
                [2] 2Key Laboratory of Jilin Province for Zoonosis Prevention and Control, Institute of Military Veterinary, Academy of Military Medical Sciences , Changchun, China
                [3] 3College of Veterinary Medicine, Jilin University , Changchun, China
                [4] 4Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Disease and Zoonoses , Yangzhou, China
                [5] 5State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Heath, The First Affiliated Hospital of Guangzhou Medical University , Guangzhou, China
                [6] 6Guangzhou Eighth People’s Hospital of Guangzhou Medical University , Guangzhou, China
                [7] 7Department of Clinical Laboratory, College of Medicine, Sir Run Run Shaw Hospital, Zhejiang University , Hangzhou, China
                Author notes

                Edited by: Dirk Dittmer, University of North Carolina at Chapel Hill, United States

                Reviewed by: Timothy Sheahan, University of North Carolina at Chapel Hill, United States; Yize Li, University of Pennsylvania, United States

                This article was submitted to Virology, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2018.01101
                5987675
                29896174
                7406f531-825e-4451-9e90-9c7f6ade8194
                Copyright © 2018 Huang, Wang, Cao, Jin, Chi, Zhao, Yu, Yan, Hu, Wu, Jiao, Hou, Xu, Zhao, Feng, Wang, Sun, Wang, Gao, Yang and Xia.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 30 December 2017
                : 08 May 2018
                Page count
                Figures: 6, Tables: 5, Equations: 0, References: 26, Pages: 9, Words: 0
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                middle east respiratory syndrome coronavirus,reverse transcription loop-mediated isothermal amplification,nucleic acid visualization,visual detection,rt-lamp-vf

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