Contributors
Chiara Damiani:
ORCID: http://orcid.org/0000-0002-5742-8302
Role: ConceptualizationRole: Data curationRole: InvestigationRole: MethodologyRole:
SoftwareRole: SupervisionRole: Writing – original draftRole: Writing – review & editing
Davide Maspero:
ORCID: http://orcid.org/0000-0001-8519-4331
Role: InvestigationRole: MethodologyRole: SoftwareRole: Visualization
Marzia Di Filippo:
ORCID: http://orcid.org/0000-0002-7428-0522
Role: InvestigationRole: MethodologyRole: Visualization
Riccardo Colombo:
ORCID: http://orcid.org/0000-0002-9499-0126
Role: InvestigationRole: Writing – review & editing
Dario Pescini:
ORCID: http://orcid.org/0000-0002-3090-4823
Role: Formal analysisRole: Writing – review & editing
Alex Graudenzi:
ORCID: http://orcid.org/0000-0001-5452-1918
Role: Formal analysisRole: Writing – review & editing
Hans Victor Westerhoff:
ORCID: http://orcid.org/0000-0002-0443-6114
Role: Writing – review & editing
Lilia Alberghina:
ORCID: http://orcid.org/0000-0003-1694-931X
Role: Project administrationRole: Writing – review & editing
Marco Vanoni: Role: Project administrationRole: Writing – review & editing
Giancarlo Mauri:
ORCID: http://orcid.org/0000-0003-3520-4022
Role: Funding acquisitionRole: Project administrationRole: Resources
Christoph Kaleta: Role: Editor
Journal
Journal ID (nlm-ta): PLoS Comput Biol
Journal ID (iso-abbrev): PLoS Comput. Biol
Journal ID (publisher-id): plos
Journal ID (pmc): ploscomp
Title:
PLoS Computational Biology
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1553-734X
ISSN
(Electronic):
1553-7358
Publication date Collection:
February
2019
Publication date
(Electronic):
28
February
2019
Volume: 15
Issue: 2
Electronic Location Identifier: e1006733
Affiliations
[1
]
Dept. of Informatics, Systems and Communication, University of Milan-Bicocca, 20126,
Milan, Italy
[2
]
SYSBIO Centre of Systems Biology, 20126, Milan, Italy
[3
]
Dept. of Biotechnology and Biosciences, University of Milan-Bicocca, 20126, Milan,
Italy
[4
]
Department of Research, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy
[5
]
Dept. of Statistics and Quantitative Methods, University of Milan-Bicocca, 20126,
Milan, Italy
[6
]
Dept. of Molecular Cell Physiology, Faculty of Earth and Life Sciences, VU University,
Amsterdam, The Netherlands
[7
]
Manchester Centre for Integrative Systems Biology, School of Chemical Engineering
and Analytical Science, University of Manchester, Manchester, United Kingdom
[8
]
Swammerdam Institute for Life Sciences, Faculty of Science, University of Amsterdam,
Amsterdam, The Netherlands
Christian Albrechts Universitat zu Kiel, GERMANY
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PCOMPBIOL-D-18-01038
DOI: 10.1371/journal.pcbi.1006733
PMC ID: 6413955
PubMed ID: 30818329
SO-VID: 7551f082-9763-4ced-aa97-cf945c1a9d94
Copyright © © 2019 Damiani et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
History
Date
received
: 20
June
2018
Date
accepted
: 22
December
2018
Page count
Figures: 5,
Tables: 0,
Pages: 25
Funding
Funded by: funder-id http://dx.doi.org/10.13039/501100003407, Ministero dell’Istruzione, dell’Università e della Ricerca;
Award ID: ITFoC
Award Recipient
:
ORCID: http://orcid.org/0000-0003-3520-4022
Giancarlo Mauri
Funded by: funder-id http://dx.doi.org/10.13039/501100003407, Ministero dell’Istruzione, dell’Università e della Ricerca;
Award ID: SYSBIO
Award Recipient
:
ORCID: http://orcid.org/0000-0003-1694-931X
Lilia Alberghina
Funded by: EU
Award ID: 311815
Award Recipient
:
ORCID: http://orcid.org/0000-0002-0443-6114
Hans Victor Westerhoff
Funded by: EU
Award ID: 64269
Award Recipient
:
ORCID: http://orcid.org/0000-0002-0443-6114
Hans Victor Westerhoff
Funded by: EU
Award ID: 654248
Award Recipient
:
ORCID: http://orcid.org/0000-0002-0443-6114
Hans Victor Westerhoff
Funded by: WOTRO
Award ID: W01.65.324.00/4
Award Recipient
:
ORCID: http://orcid.org/0000-0002-0443-6114
Hans Victor Westerhoff
This work is supported with FOE funds to SYSBIO Italian Centre of Systems Biology,
from the Italian Ministry of Education, Universities and Research (MIUR,
http://www.istruzione.it/) - within the Italian Roadmap for ESFRI Research Infrastructures. GM, LA, CD and
MV received funding from FLAG-ERA grant ITFoC. HVW received EU (311815; 642691; 654248)
and WOTRO (W01.65.324.00/4) funding. The funders had no role in study design, data
collection and analysis, decision to publish, or preparation of the manuscript.
Categories
Subject:
Research Article
Subject:
Biology and Life Sciences
Subject:
Cell Biology
Subject:
Cell Physiology
Subject:
Cell Metabolism
Subject:
Medicine and Health Sciences
Subject:
Pharmacology
Subject:
Pharmacokinetics
Subject:
Drug Metabolism
Subject:
Computer and Information Sciences
Subject:
Network Analysis
Subject:
Metabolic Networks
Subject:
Biology and Life Sciences
Subject:
Computational Biology
Subject:
Genome Analysis
Subject:
Transcriptome Analysis
Subject:
Biology and Life Sciences
Subject:
Genetics
Subject:
Genomics
Subject:
Genome Analysis
Subject:
Transcriptome Analysis
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Metabolism
Subject:
Metabolic Pathways
Subject:
Biology and Life Sciences
Subject:
Physiology
Subject:
Physiological Processes
Subject:
Secretion
Subject:
Medicine and Health Sciences
Subject:
Physiology
Subject:
Physiological Processes
Subject:
Secretion
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Metabolism
Subject:
Metabolites
Subject:
Biology and Life Sciences
Subject:
Biochemistry
Subject:
Metabolism
Subject:
Oxygen Metabolism
Custom metadata