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      Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

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      1 , 2 , 3 , 2 , 1 , 2 , 4 , 1 , 5 , 6 , 5 , 5 , 1 ,   7 , 8 , 9 , 10 , 10 , 6 , 6 , 11 , 12 , 13 , 9 , 14 , 15 , 12 , 13 , 16 , 7 , 3 , 17 , 6 , 5 , 2 , 18 , a , 1
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          Abstract

          Two of the largest crude oil-polluted areas in the world are the semi-enclosed Mediterranean and Red Seas, but the effect of chronic pollution remains incompletely understood on a large scale. We compared the influence of environmental and geographical constraints and anthropogenic forces (hydrocarbon input) on bacterial communities in eight geographically separated oil-polluted sites along the coastlines of the Mediterranean and Red Seas. The differences in community compositions and their biodegradation potential were primarily associated (P < 0.05) with both temperature and chemical diversity. Furthermore, we observed a link between temperature and chemical and biological diversity that was stronger in chronically polluted sites than in pristine ones where accidental oil spills occurred. We propose that low temperature increases bacterial richness while decreasing catabolic diversity and that chronic pollution promotes catabolic diversification. Our results further suggest that the bacterial populations in chronically polluted sites may respond more promptly in degrading petroleum after accidental oil spills.

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          Most cited references16

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          Climate change and impacts in the Eastern Mediterranean and the Middle East

          The Eastern Mediterranean and the Middle East (EMME) are likely to be greatly affected by climate change, associated with increases in the frequency and intensity of droughts and hot weather conditions. Since the region is diverse and extreme climate conditions already common, the impacts will be disproportional. We have analyzed long-term meteorological datasets along with regional climate model projections for the 21st century, based on the intermediate IPCC SRES scenario A1B. This suggests a continual, gradual and relatively strong warming of about 3.5–7°C between the 1961–1990 reference period and the period 2070–2099. Daytime maximum temperatures appear to increase most rapidly in the northern part of the region, i.e. the Balkan Peninsula and Turkey. Hot summer conditions that rarely occurred in the reference period may become the norm by the middle and the end of the 21st century. Projected precipitation changes are quite variable. Annual precipitation is expected to decrease in the southern Europe – Turkey region and the Levant, whereas in the Arabian Gulf area it may increase. In the former region rainfall is actually expected to increase in winter, while decreasing in spring and summer, with a substantial increase of the number of days without rainfall. Anticipated regional impacts of climate change include heat stress, associated with poor air quality in the urban environment, and increasing scarcity of fresh water in the Levant. Electronic supplementary material The online version of this article (doi:10.1007/s10584-012-0418-4) contains supplementary material, which is available to authorized users.
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            Temperature drives the continental-scale distribution of key microbes in topsoil communities.

            Global warming will likely force terrestrial plant and animal species to migrate toward cooler areas or sustain range losses; whether this is also true for microorganisms remains unknown. Through continental-scale compositional surveys of soil crust microbial communities across arid North America, we observed a latitudinal replacement in dominance between two key topsoil cyanobacteria that was driven largely by temperature. The responses to temperature of enrichment cultures and cultivated strains support this contention, with one cyanobacterium (Microcoleus vaginatus) being more psychrotolerant and less thermotolerant than the other (M. steenstrupii). In view of our data and regional climate predictions, the latter cyanobacterium may replace the former in much of the studied area within the next few decades, with unknown ecological consequences for soil fertility and erodibility.
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              Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

              The Deepwater Horizon oil spill in the Gulf of Mexico is the deepest and largest offshore spill in the United State history and its impacts on marine ecosystems are largely unknown. Here, we showed that the microbial community functional composition and structure were dramatically altered in a deep-sea oil plume resulting from the spill. A variety of metabolic genes involved in both aerobic and anaerobic hydrocarbon degradation were highly enriched in the plume compared with outside the plume, indicating a great potential for intrinsic bioremediation or natural attenuation in the deep sea. Various other microbial functional genes that are relevant to carbon, nitrogen, phosphorus, sulfur and iron cycling, metal resistance and bacteriophage replication were also enriched in the plume. Together, these results suggest that the indigenous marine microbial communities could have a significant role in biodegradation of oil spills in deep-sea environments.
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                Author and article information

                Journal
                Sci Rep
                Sci Rep
                Scientific Reports
                Nature Publishing Group
                2045-2322
                29 June 2015
                2015
                : 5
                : 11651
                Affiliations
                [1 ]Institute of Catalysis, Consejo Superior de Investigaciones Científicas , Madrid, Spain
                [2 ]Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan , Milan, Italy
                [3 ]Centro de Metabolómica y Bioanálisis (CEMBIO), Facultad de Farmacia, Universidad CEU San Pablo , Campus Montepríncipe, Madrid, Spain
                [4 ]Ribocon GmbH , Bremen, Germany
                [5 ]Institute for Coastal Marine Environment, Consiglio Nazionale delle Ricerche, Messina, Italy
                [6 ]School of Biological Sciences, Bangor University , Bangor, UK
                [7 ]School of Environmental Engineering, TU-Crete , Chania, Greece
                [8 ]Environmental Biotechnology Department, Genetic Engineering and Biotechnology Research Institute, City for Scientific Research & Technology Applications , Alexandria, Egypt
                [9 ]EcoTechSystems Ltd. , Ancona, Italy
                [10 ]BGI Tech Solutions Co., Ltd, Main Building, Beishan Industrial Zone , Yantian District, Shenzhen, China
                [11 ]LR Biotechnology and Bio-Geo Resources Valorization (LR11ES31), Higher Institute for Biotechnology - University of Manouba, Biotechpole of Sidi Thabet, 2020, Sidi Thabet , Ariana, Tunisia
                [12 ]Laboratory of Microorganisms and Active Biomolecules, University of Tunis El Manar , Tunis, Tunisia
                [13 ]Laboratory of Microbiology, Biotechnology and Environment, University Hassan II – Ain Chock , Casablanca, Morocco
                [14 ]Department of Biological Sciences, Yarmouk University , Irbid, Jordan
                [15 ]Faculty of Marine Sciences, The University of Jordan-Aqaba , Jordan
                [16 ]Bioprocess Development Department, Genetic Engineering and Biotechnology Research Institute, City for Scientific Research & Technology Applications , Alexandria, Egypt
                [17 ]Hamdan Bin Mohammad Smart University, Academic City , Dubai, United Arab Emirates
                [18 ]King Abdullah University of Science and Technology , BESE Division, Thuwal, 23955-6900, Kingdom of Saudi Arabia
                Author notes
                [*]

                Current address: Friedrich Loeffler Institute - Federal Research Institute for Animal Health, Institute of Novel and Emerging Infectious Diseases, 17493 Greifswald, Germany.

                [†]

                These authors contributed equally to this work.

                Article
                srep11651
                10.1038/srep11651
                4484246
                26119183
                77046fa8-2575-493f-87cc-cbd8717e800c
                Copyright © 2015, Macmillan Publishers Limited

                This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

                History
                : 02 November 2014
                : 29 May 2015
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