14
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Biomarker analysis of American toad ( Anaxyrus americanus) and grey tree frog ( Hyla versicolor) tadpoles following exposure to atrazine

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The objective of the current study was to use a biomarker-based approach to investigate the influence of atrazine exposure on American toad ( Anaxyrus americanus) and grey tree frog ( Hyla versicolor) tadpoles. Atrazine is one of the most frequently detected herbicides in environmental matrices throughout the United States. In surface waters, it has been found at concentrations from 0.04–2859 μg/L and thus presents a likely exposure scenario for non-target species such as amphibians. Studies have examined the effect of atrazine on the metamorphic parameters of amphibians, however, the data are often contradictory. Gosner stage 22–24 tadpoles were exposed to 0 (control), 10, 50, 250 or 1250 μg/L of atrazine for 48 h. Endogenous polar metabolites were extracted and analyzed using gas chromatography coupled with mass spectrometry. Statistical analyses of the acquired spectra with machine learning classification models demonstrated identifiable changes in the metabolomic profiles between exposed and control tadpoles. Support vector machine models with recursive feature elimination created a more efficient, non-parametric data analysis and increased interpretability of metabolomic profiles. Biochemical fluxes observed in the exposed groups of both A. americanus and H. versicolor displayed perturbations in a number of classes of biological macromolecules including fatty acids, amino acids, purine nucleosides, pyrimidines, and mono- and di-saccharides. Metabolomic pathway analyses are consistent with findings of other studies demonstrating disruption of amino acid and energy metabolism from atrazine exposure to non-target species.

          Related collections

          Most cited references46

          • Record: found
          • Abstract: found
          • Article: not found

          Innovation: Metabolomics: the apogee of the omics trilogy.

          Metabolites, the chemical entities that are transformed during metabolism, provide a functional readout of cellular biochemistry. With emerging technologies in mass spectrometry, thousands of metabolites can now be quantitatively measured from minimal amounts of biological material, which has thereby enabled systems-level analyses. By performing global metabolite profiling, also known as untargeted metabolomics, new discoveries linking cellular pathways to biological mechanism are being revealed and are shaping our understanding of cell biology, physiology and medicine.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            XCMS Online: a web-based platform to process untargeted metabolomic data.

            Recently, interest in untargeted metabolomics has become prevalent in the general scientific community among an increasing number of investigators. The majority of these investigators, however, do not have the bioinformatic expertise that has been required to process metabolomic data by using command-line driven software programs. Here we introduce a novel platform to process untargeted metabolomic data that uses an intuitive graphical interface and does not require installation or technical expertise. This platform, called XCMS Online, is a web-based version of the widely used XCMS software that allows users to easily upload and process liquid chromatography/mass spectrometry data with only a few mouse clicks. XCMS Online provides a solution for the complete untargeted metabolomic workflow including feature detection, retention time correction, alignment, annotation, statistical analysis, and data visualization. Results can be browsed online in an interactive, customizable table showing statistics, chromatograms, and putative METLIN identities for each metabolite. Additionally, all results and images can be downloaded as zip files for offline analysis and publication. XCMS Online is available at https://xcmsonline.scripps.edu.
              Bookmark
              • Record: found
              • Abstract: not found
              • Article: not found

              Effects of habitat loss and fragmentation on amphibians: A review and prospectus

                Bookmark

                Author and article information

                Journal
                8500246
                21488
                Aquat Toxicol
                Aquat. Toxicol.
                Aquatic toxicology (Amsterdam, Netherlands)
                0166-445X
                1879-1514
                31 July 2018
                21 November 2016
                January 2017
                14 August 2018
                : 182
                : 184-193
                Affiliations
                [a ]Grantee to U.S. Environmental Protection Agency via Oak Ridge Institute of Science and Education, Athens, GA, 30605, United States
                [b ]U.S. Environmental Protection Agency, Office of Research and Development, National Health and Ecological Effects Laboratory, 200 SW 35th St., Corvallis, OR, 97333, United States
                [c ]U.S. Environmental Protection Agency, Office of Research and Development, National Exposure Research Laboratory, 960 College Station Road, Athens, GA, 30605, United States
                Author notes
                [* ]Corresponding author at: U.S. Environmental Protection Agency, Office of Research and Development, National Health and Ecological Effects Laboratory, 200 SW 35th St., Corvallis, OR, 97333, United States. snyder.marcia@ 123456epa.gov (M.N. Snyder)
                Article
                EPAPA983256
                10.1016/j.aquatox.2016.11.018
                6091528
                27912165
                7752b055-ba06-44b3-9472-d061f95129f5

                This is an open access article under the CC BY license ( http://creativecommons.org/licenses/by/4.0/).

                History
                Categories
                Article

                Toxicology
                biomarkers,amphibians,pesticides,support vector machine,metabolites
                Toxicology
                biomarkers, amphibians, pesticides, support vector machine, metabolites

                Comments

                Comment on this article