Blog
About

  • Record: found
  • Abstract: not found
  • Article: not found
Is Open Access

In situ electrochemical enrichment and isolation of a magnetite-reducing bacterium from a high pH serpentinizing spring : Mineral reduction in a high pH serpentinizing spring

Read this article at

ScienceOpenPublisher
Bookmark
      There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

      Related collections

      Most cited references 61

      • Record: found
      • Abstract: not found
      • Article: not found

      QIIME allows analysis of high-throughput community sequencing data.

        Bookmark
        • Record: found
        • Abstract: found
        • Article: found
        Is Open Access

        UCHIME improves sensitivity and speed of chimera detection

        Motivation: Chimeric DNA sequences often form during polymerase chain reaction amplification, especially when sequencing single regions (e.g. 16S rRNA or fungal Internal Transcribed Spacer) to assess diversity or compare populations. Undetected chimeras may be misinterpreted as novel species, causing inflated estimates of diversity and spurious inferences of differences between populations. Detection and removal of chimeras is therefore of critical importance in such experiments. Results: We describe UCHIME, a new program that detects chimeric sequences with two or more segments. UCHIME either uses a database of chimera-free sequences or detects chimeras de novo by exploiting abundance data. UCHIME has better sensitivity than ChimeraSlayer (previously the most sensitive database method), especially with short, noisy sequences. In testing on artificial bacterial communities with known composition, UCHIME de novo sensitivity is shown to be comparable to Perseus. UCHIME is >100× faster than Perseus and >1000× faster than ChimeraSlayer. Contact: robert@drive5.com Availability: Source, binaries and data: http://drive5.com/uchime. Supplementary information: Supplementary data are available at Bioinformatics online.
          Bookmark
          • Record: found
          • Abstract: not found
          • Article: not found

          Ferrozine---a new spectrophotometric reagent for iron

            Bookmark

            Author and article information

            Affiliations
            [1 ]Department of Earth Sciences; University of Southern California; Los Angeles CA 90089 USA
            [2 ]Department of Applied and Chemical Engineering; University of Tokyo; Tokyo Japan
            [3 ]Department of Biological Sciences; University of Southern California; Los Angeles CA 90089 USA
            [4 ]Center for Green Research on Energy and Environmental Materials; National Institute for Material Sciences; Tsukuba Ibaraki 305-0047 Japan
            Journal
            Environmental Microbiology
            Environ Microbiol
            Wiley
            14622912
            June 2017
            June 2017
            May 05 2017
            : 19
            : 6
            : 2272-2285
            10.1111/1462-2920.13723
            © 2017

            http://doi.wiley.com/10.1002/tdm_license_1.1

            http://creativecommons.org/licenses/by/4.0/

            http://creativecommons.org/licenses/by/4.0/

            Comments

            Comment on this article