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      Viral infections amidst COVID‐19 in Africa: Implications and recommendations

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          Abstract

          Viral infections have been on the rise for the past decades. The impact of the viruses worsened amidst the pandemic burdening the already overwhelmed health care system in African countries. This article sheds light on how the coronavirus together with the already existing viral infections, some of which re‐emerged, impacted the continent. The strategies in place such as immunization, education, will have to be strengthened in all African countries to reduce the burden. Furthermore, governments can further collaborate with other countries in creating guidelines to reduce co‐infection of the diseases.

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          Neurological manifestations in COVID‐19 caused by SARS‐CoV‐2

          Abdul Baig (2020)
          1 COMMENT The recent outbreak of COVID‐19 caused by SARS‐CoV‐2 coronavirus has turned the world into chaos with its ominously high rate of transmissions. As the SARS‐CoV‐2 infection has become pandemic, the scientific community is in a race against time to beat the COVID‐19 by unraveling molecular targets and discover epitopes in the protein sequences of SARS‐CoV‐2 for vaccines/antibodies synthesis. It has been reported that in addition to the conventional respiratory complains of flu, patients are also exhibiting neurological signs and symptoms. Recently, the report of a patient with COVID‐19 exhibiting loss of the involuntary process of breathing 1 controlled by the inspiratory area in the brainstem, is alarming. Additionally, neurological deficits reported in uncomplicated and complicated patients with COVID‐19 2 from hospitals in Wuhan, China, are convincing enough that the neurological deficits could be ongoing in the recent outbreak without getting noticed. As the recent outbreak has now spread to almost all of the continents and has become pandemic, we are in the early phases of our attempts to understand the syndromic complexity of the COVID‐19. The SARS‐CoV‐2 causing COVID‐19 can take two pathways to involve the brain (Figure 1). Early occurrences of loss of smell, ataxia, and convulsions should be further evaluated for CNS involvement by SARS‐CoV‐2. FIGURE 1 Neurological manifestations in COVID‐19. Fever with headaches (A) may occur early in COVID‐19 patients. Specific manifestations related to neurological deficits like loss of smell, taste, ataxia and convulsions have been reported in COVID‐19. The possible entry of SARS‐CoV‐2 to reach the brain via cribriform plate (B) or after systemic circulatory dissemination following infection of the lung (C), in early or late phases of COVID‐19 may result in loss of involuntary control of breathing resulting in acute respiratory insufficiency requiring assisted ventilation (D) The clinicians throughout the world in general, and Wuhan, China, in particular, are getting the firsthand to study and report the real‐time clinical presentations of the patients affected by COVID‐19. The prognostic and diagnostic significance of neurological sign and symptoms in COVID‐19 patients can be gauged by fact that the protocol designed to investigate the First Few X cases (FFX) and their close contacts by the World Health Organization (WHO), includes a separate section for “other neurological signs” in addition to separate columns for respiratory symptoms. 3 Additionally, reports of COVID‐19‐affected individuals experiencing convulsions in prevalent areas is alarming and need to be distinguished from febrile convolution that is expected to occur with high‐grade fever in patients with COVID‐19. Our experience with taxonomically related SARS‐CoV patients in the past has proven beyond doubt the coronaviruses to affect the brain. Of many examples from the past, was a case where SARS‐CoV was isolated from the brain of a patient who had exhibited features of neurological deficits on 28th day of infection. 4 In past outbreaks with SARS‐CoV, it has been shown that it targets the CNS 5 and the reports that the brain also is an additional target of SARS‐CoV 4 raises the possibility of the presentation of more patients with neurological manifestations in the ongoing outbreak of COIVD‐19. Also, SARS‐CoV has been isolated from brain tissue with edema and neuronal degeneration as seen at autopsies with immunohistochemistry, in situ hybridization, and electron microscopic confirmation of viral infection of the neurons. 6 It would not be surprising to see the COVID‐19 virus following the same trend as both viruses are near identical taxonomically. As the pandemic is in effect at present, a detailed timeline of the syndromic neurological manifestation in COVID‐19 will emerge as more studies get published on complicated and uncomplicated cases of COVID‐19. Though the understanding of the pathogenetic mechanisms underlying the CNS invasion will be revealed in time, there is an urgent need to distinguish between neurologically affected CVOID‐19 patients and those who do not exhibit the sign and symptoms of CNS involvement. The hematogenous route appears to be the likely pathway for SARS‐CoV‐2 to reach the brain, but other routes to the CNS like across the cribriform plate (Figure 1B) of the ethmoid bone in proximity to the olfactory bulb 7 should be taken into consideration in cases of early‐phase COVID‐19‐affected patients who exhibit loss of smell and taste accompanied with neurological signs and symptoms. Studies believe that direct SARS‐CoV infection of the human CNS does occur in some patients. 8 It is also important to mention here that the neurological signs and symptoms observed in the COVID‐19 cases could be a manifestation of hypoxia, respiratory, and metabolic acidosis at an advanced stage of the disease, but reasonably, a differential diagnosis of these cases is needed, which could prove lifesaving. The later distinction also appears to be important from the vantage point of selecting a treatment regimen, as management of the COVID‐19 cases with neurological involvement would require more specific and aggressive treatments as compared to the patients without it. The significance of a thorough neurological assessment of COVID‐19 patients cannot be overemphasized which can rule‐in or rule out a neurological deficit of a patient admitted after serological tests confirming the diagnosis of COVID‐19. Presence of neurological deficits followed by laboratory tests like serum urea, creatinine, electrolytes, and blood gases (PO2‐PCO2) can be helpful in the determination of primary or secondary involvement of the CNS in COVID‐19‐affected patients. With our experience and lessons learned from the past SARS‐CoV 4 , 5 , 6 infections, specific investigation like attempts to isolate SARS‐CoV‐2 from CSF, as has been reported recently 9 , could prove to be of enormous advantage to diagnose an early or potentially complicated cases of COVID‐19. As neuronal death in CoV infections is not accompanied by substantial inflammation, 8 clinical signs and symptoms of meningoencephalitis cannot be relied upon. As we are in a learning phase of what COVID‐19 presents with and how the patients are different from SARS‐CoV‐affected cases reported in the past, it is difficult if not impossible, to predict any particular diagnostic neurological test to ascertain the high‐risk COVID‐19 patients with covert infections of the CNS. As neurological deficits do occur in terminally ill patients with COVID‐19 (Figure 1D), an early differential diagnosis can be lifesaving in COVID‐19 patients. A biomarker in CSF or serum of the COVID‐19 patients with neurological deficits would have been of ideal to diagnose cases of COVID‐19 with CNS involvement, but with the unavailability of such methods, as of yet, smearing every possible method to include or exclude the COVID‐19 cases with neurological damage needs to be implemented. We identified initially and stressed upon the inclusion of features like the loss of smell and taste that occur during the early phase of COVID‐19 7 infections to be of significance. Attempts to isolate COVID‐19 from CSF 7 , 9 can be done in patients obvious findings of neurological involvement. With the vascular endothelium well known to express the ACE2 receptors (the target receptor of SARS‐CoV‐2), it would be interesting to see whether SARS‐CoV‐2 can be isolated from CNS at autopsy from the endothelial linings within the zones adjacent to the necrotic areas in COVID‐19 patients, as has been reported recently. 10 The later study, and recent reports of detection of SARS‐CoV‐2 in the CSF of the COVID‐19 patient 9 without a reasonable doubt validate our rationale of CNS being targeted by SARS‐CoV‐2 as pointed out recently 7 . Many news outlets, Blogs and COVID‐19 related information resources on Internet have helped in spreading our findings of “loss of smell and taste in COVID‐19” that has resulted in recognition of anosmia and hypogeusia as a significant alerting feature of COVID‐19. One example is that the American academy of otolaryngology‐head and neck surgery has also released a statement recently noting that anosmia and dysgeusia are ‘significant symptoms’ associated with COVID‐19 11 .
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            The impact of the COVID-19 lockdown on HIV care in 65 South African primary care clinics: an interrupted time series analysis

            Summary Background The effect of the COVID-19 pandemic on HIV outcomes in low-income and middle-income countries is poorly described. We aimed to measure the impact of the 2020 national COVID-19 lockdown on HIV testing and treatment in KwaZulu-Natal, South Africa, where 1·7 million people are living with HIV. Methods In this interrupted time series analysis, we analysed anonymised programmatic data from 65 primary care clinics in KwaZulu-Natal province, South Africa. We included data from people testing for HIV, initiating antiretroviral therapy (ART), and collecting ART at participating clinics during the study period, with no age restrictions. We used descriptive statistics to summarise demographic and clinical data, and present crude summaries of the main outcomes of numbers of HIV tests per month, ART initiations per week, and ART collection visits per week, before and after the national lockdown that began on March 27, 2020. We used Poisson segmented regression models to estimate the immediate impact of the lockdown on these outcomes, as well as post-lockdown trends. Findings Between Jan 1, 2018, and July 31, 2020, we recorded 1 315 439 HIV tests. Between Jan 1, 2018, and June 15, 2020, we recorded 71 142 ART initiations and 2 319 992 ART collection visits. We recorded a median of 41 926 HIV tests per month before lockdown (January, 2018, to March, 2020; IQR 37 838–51 069) and a median of 38 911 HIV tests per month after lockdown (April, 2020, to July, 2020; IQR 32 699–42 756). In the Poisson regression model, taking into account long-term trends, lockdown was associated with an estimated 47·6% decrease in HIV testing in April, 2020 (incidence rate ratio [IRR] 0·524, 95% CI 0·446–0·615). ART initiations decreased from a median of 571 per week before lockdown (IQR 498–678), to 375 per week after lockdown (331–399), with an estimated 46·2% decrease in the Poisson regression model in the first week of lockdown (March 30, 2020, to April 5, 2020; IRR 0·538, 0·459–0·630). There was no marked change in the number of ART collection visits (median 18 519 visits per week before lockdown [IQR 17 074–19 922] vs 17 863 visits per week after lockdown [17 509–18 995]; estimated effect in the first week of lockdown IRR 0·932, 95% CI 0·794–1·093). As restrictions eased, HIV testing and ART initiations gradually improved towards pre-lockdown levels (slope change 1·183/month, 95% CI 1·113–1·256 for HIV testing; 1·156/month, 1·085–1·230 for ART initiations). Interpretation ART provision was generally maintained during the 2020 COVID-19 lockdown, but HIV testing and ART initiations were heavily impacted. Strategies to increase testing and treatment initiation should be implemented. Funding Wellcome Trust, Africa Oxford Initiative.
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              Dengue virus infection in people residing in Africa: a systematic review and meta-analysis of prevalence studies

              Better knowledge of the face of the current dengue virus (DENV) epidemiology in Africa can help to implement efficient strategies to curb the burden of dengue fever. We conducted this systematic review and meta-analysis to determine the prevalence of DENV infection in Africa. We searched PubMed, EMBASE, African Journals Online, and Africa Index Medicus from January 1st, 2000 to June 10th, 2019 without any language restriction. We used a random-effects model to pool studies. A total of 76 studies (80,977 participants; 24 countries) were included. No study had high risk of bias. Twenty-two (29%) had moderate and 54 (71%) had low risk of bias. In apparently healthy individuals, the pooled prevalence of DENV was 15.6% (95% confidence interval 9.9–22.2), 3.5% (0.8–7.8), and 0.0% (0.0–0.5) respectively for immunoglobulins (Ig) G, IgM, and for ribonucleic acid (RNA) in apparently healthy populations. In populations presenting with fever, the prevalence was 24.8% (13.8–37.8), 10.8% (3.8–20.6k) and 8.4% (3.7–14.4) for IgG, IgM, and for RNA respectively. There was heterogeneity in the distribution between different regions of Africa. The prevalence of DENV infection is high in the African continent. Dengue fever therefore deserves more attention from healthcare workers, researchers, and health policy makers.
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                Author and article information

                Contributors
                yasir.essar@gmail.com
                Journal
                J Med Virol
                J Med Virol
                10.1002/(ISSN)1096-9071
                JMV
                Journal of Medical Virology
                John Wiley and Sons Inc. (Hoboken )
                0146-6615
                1096-9071
                22 July 2021
                22 July 2021
                : 10.1002/jmv.27211
                Affiliations
                [ 1 ] Oli Health Magazine Organization, Research and Education Kigali Rwanda
                [ 2 ] Clinton Global Initiative University New York USA
                [ 3 ] Faculty of Medicine Karadeniz Technical University Trabzon Turkey
                [ 4 ] Department of Medicine and Surgery, Faculty of Clinical Sciences, College of Medicine University of Ibadan Ibadan Oyo Nigeria
                [ 5 ] Healthy Africans Platform, Research and Development Ibadan Nigeria
                [ 6 ] Department of Biochemistry and Molecular Biology, Faculty of Life Science Mawlana Bhashani Science and Technology University Tangail Bangladesh
                [ 7 ] Division of Infectious Diseases The Red‐Green Research Centre, BICCB Dhaka Bangladesh
                [ 8 ] Faculty of Medicine Ibn Sina University Khartoum Sudan
                [ 9 ] Kwara State Polytechnic Ilorin Nigeria
                [ 10 ] Kwara State University, Malete Ilorin Nigeria
                [ 11 ] West African Academy of Public Health Abuja Nigeria
                [ 12 ] Faculty of Pharmacy and Pharmaceutical Sciences Kwame Nkrumah University of Science and Technology Kumasi Ghana
                [ 13 ] Department of Child Health Tamale Teaching Hospital Tamale, Northern Region Tamale Ghana
                [ 14 ] Department of Internal Medicine Federal University of Bahia Salvador Bahia Brazil
                [ 15 ] Department of Medicine and General Surgery Punjab Medical College Faisalabad Pakistan
                [ 16 ] Faisalabad Medical University Faisalabad Pakistan
                [ 17 ] Faculty of Dentistry Kabul University of Medical Sciences Kabul Afghanistan
                Author notes
                [*] [* ] Correspondence Mohammad Yasir Essar, Kabul University of Medical Sciences, 1001 Kabul, Afghanistan.

                Email: yasir.essar@ 123456gmail.com

                Author information
                http://orcid.org/0000-0002-0692-9027
                http://orcid.org/0000-0002-3871-889X
                http://orcid.org/0000-0003-2516-5920
                http://orcid.org/0000-0001-8486-7899
                http://orcid.org/0000-0002-7241-7724
                http://orcid.org/0000-0002-6554-7619
                Article
                JMV27211
                10.1002/jmv.27211
                8426946
                34260094
                7a15d155-0685-429f-aaf7-569de5e9206d
                © 2021 Wiley Periodicals LLC

                This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response. It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

                History
                : 05 June 2021
                : 13 July 2021
                Page count
                Figures: 1, Tables: 0, Pages: 5, Words: 3395
                Categories
                Short Communication
                Short Communications
                Custom metadata
                2.0
                corrected-proof
                Converter:WILEY_ML3GV2_TO_JATSPMC version:6.0.7 mode:remove_FC converted:09.09.2021

                Microbiology & Virology
                africa,covid‐19,immunization,viral infections
                Microbiology & Virology
                africa, covid‐19, immunization, viral infections

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