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      An In-Depth Comparison of Latent HIV-1 Reactivation in Multiple Cell Model Systems and Resting CD4+ T Cells from Aviremic Patients

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          Abstract

          The possibility of HIV-1 eradication has been limited by the existence of latently infected cellular reservoirs. Studies to examine control of HIV latency and potential reactivation have been hindered by the small numbers of latently infected cells found in vivo. Major conceptual leaps have been facilitated by the use of latently infected T cell lines and primary cells. However, notable differences exist among cell model systems. Furthermore, screening efforts in specific cell models have identified drug candidates for “anti-latency” therapy, which often fail to reactivate HIV uniformly across different models. Therefore, the activity of a given drug candidate, demonstrated in a particular cellular model, cannot reliably predict its activity in other cell model systems or in infected patient cells, tested ex vivo. This situation represents a critical knowledge gap that adversely affects our ability to identify promising treatment compounds and hinders the advancement of drug testing into relevant animal models and clinical trials. To begin to understand the biological characteristics that are inherent to each HIV-1 latency model, we compared the response properties of five primary T cell models, four J-Lat cell models and those obtained with a viral outgrowth assay using patient-derived infected cells. A panel of thirteen stimuli that are known to reactivate HIV by defined mechanisms of action was selected and tested in parallel in all models. Our results indicate that no single in vitro cell model alone is able to capture accurately the ex vivo response characteristics of latently infected T cells from patients. Most cell models demonstrated that sensitivity to HIV reactivation was skewed toward or against specific drug classes. Protein kinase C agonists and PHA reactivated latent HIV uniformly across models, although drugs in most other classes did not.

          Author Summary

          HIV establishes a state of latency in vivo and this latent reservoir, although small, is difficult to eradicate. To be able to better understand this state of latency, and to develop strategies to eliminate it, many groups have developed in vitro models of HIV latency. However, notable differences exist among cell model systems because compounds that reactivate latent HIV in a particular system often fail to do so uniformly across different models. To begin to understand the biological characteristics that are inherent to each HIV model of latency, we compared the response properties of five primary T cell, four J-Lat cell models and those obtained with patient-derived infected cells. A panel of thirteen stimuli that are known to reactivate HIV by defined mechanisms of action was selected and tested in parallel in all models.

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          Most cited references79

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          Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.

          The hypothesis that quiescent CD4+ T lymphocytes carrying proviral DNA provide a reservoir for human immunodeficiency virus-type 1 (HIV-1) in patients on highly active antiretroviral therapy (HAART) was examined. In a study of 22 patients successfully treated with HAART for up to 30 months, replication-competent virus was routinely recovered from resting CD4+ T lymphocytes. The frequency of resting CD4+ T cells harboring latent HIV-1 was low, 0.2 to 16.4 per 10(6) cells, and, in cross-sectional analysis, did not decrease with increasing time on therapy. The recovered viruses generally did not show mutations associated with resistance to the relevant antiretroviral drugs. This reservoir of nonevolving latent virus in resting CD4+ T cells should be considered in deciding whether to terminate treatment in patients who respond to HAART.
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            Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection.

            The capacity of HIV-1 to establish latent infection of CD4+ T cells may allow viral persistence despite immune responses and antiretroviral therapy. Measurements of infectious virus and viral RNA in plasma and of infectious virus, viral DNA and viral messenger RNA species in infected cells all suggest that HIV-1 replication continues throughout the course of infection. Uncertainty remains over what fraction of CD4+ T cells are infected and whether there are latent reservoirs for the virus. We show here that during the asymptomatic phase of infection there is an extremely low total body load of latently infected resting CD4+ T cells with replication-competent integrated provirus (<10(7) cells). The most prevalent form of HIV-1 DNA in resting and activated CD4+ T cells is a full-length, linear, unintegrated form that is not replication competent. The infection progresses even though at any given time in the lymphoid tissues integrated HIV-1 DNA is present in only a minute fraction of the susceptible populations, including resting and activated CD4+ T cells and macrophages.
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              HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

              The presence of latent reservoirs has prevented the eradication of human immunodeficiency virus (HIV) from infected patients successfully treated with anti-retroviral therapy. The mechanism of postintegration latency is poorly understood, partly because of the lack of an in vitro model. We have used an HIV retroviral vector or a full-length HIV genome expressing green fluorescent protein to infect a T lymphocyte cell line in vitro and highly enrich for latently infected cells. HIV latency occurred reproducibly, albeit with low frequency, during an acute infection. Clonal cell lines derived from latent populations showed no detectable basal expression, but could be transcriptionally activated after treatment with phorbol esters or tumor necrosis factor alpha. Direct sequencing of integration sites demonstrated that latent clones frequently contain HIV integrated in or close to alphoid repeat elements in heterochromatin. This is in contrast to a productive infection where integration in or near heterochromatin is disfavored. These observations demonstrate that HIV can reproducibly establish a latent infection as a consequence of integration in or near heterochromatin.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                plospath
                PLoS Pathogens
                Public Library of Science (San Francisco, USA )
                1553-7366
                1553-7374
                December 2013
                December 2013
                26 December 2013
                : 9
                : 12
                : e1003834
                Affiliations
                [1 ]Veterans Administration San Diego Healthcare System, San Diego, California, United States of America
                [2 ]Department of Pathology, University of California San Diego, La Jolla, California, United States of America
                [3 ]Department of Infectious Diseases, Alfred Hospital, Melbourne, Australia
                [4 ]Department of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
                [5 ]Division of Microbiology and Immunology, Department of Pathology, University of Utah School of Medicine, Salt Lake City, Utah, United States of America
                [6 ]Gladstone Institute of Virology and Immunology, University of California San Francisco, San Francisco, California, United States of America
                [7 ]Department of Microbiology and Immunology, University of California San Francisco, San Francisco, California, United States of America
                [8 ]Division of Pharmacotherapy and Experimental Therapeutics, Eshelman School of Pharmacy, University of North Carolina School of Medicine, Chapel Hill, North Carolina, United States of America
                [9 ]Monash University, Melbourne, Australia
                [10 ]Centre for Biomedical Research, Burnet Institute, Melbourne, Australia
                [11 ]Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
                [12 ]Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America
                [13 ]Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America
                [14 ]Howard Hughes Medical Institute, Baltimore, Maryland, United States of America
                [15 ]Department of Medicine, University of California San Diego, La Jolla, California, United States of America
                Fred Hutchinson Cancer Research Center, United States of America
                Author notes

                The authors have declared that no competing interests exist.

                Conceived and designed the experiments: CAS AB WCG AK SRL DMM RFS EV VP. Performed the experiments: JA NMA JC MF MM DR SS KS PCS VHT SX. Analyzed the data: CAS AS CW SW VP. Contributed reagents/materials/analysis tools: AK. Wrote the paper: VP.

                [¤a]

                Current address: AIDS Immunopathogenesis Unit, Division of Immunology, Transplantation and Infectious Diseases, San Raffaele Scientific Institute, Milan, Italy.

                [¤b]

                Current address: Università Vita-Salute San Raffaele, School of Medicine, Milan, Italy.

                [¤c]

                Current address: Faculty of Medicine, Southampton General Hospital, Tremona Road, Southampton, United Kingdom.

                Article
                PPATHOGENS-D-13-02181
                10.1371/journal.ppat.1003834
                3873446
                24385908
                7b03172c-a119-4f5c-a4c7-dc1311d4dc7e
                Copyright @ 2013

                This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

                History
                : 9 August 2013
                : 30 October 2013
                Page count
                Pages: 15
                Funding
                This work was supported by the Collaboratory of AIDS Researchers for Eradication (NIH Grant U19AI096113; DMM, Principal Investigator; CAS, WCG, RFS, EV, CW, VP Project Leaders). This work was performed with the support of the Genomics and Flow Cytometry Cores at the UCSD Center for AIDS Research (AI36214), the San Diego Veterans Medical Research Foundation, and The James B. Pendleton Charitable Trust. This material is based upon work supported in part by the Department of Veterans Affairs (VA), Veterans Health Administration, Office of Research and Development. SRL is supported by the National Health and Medical Research Council (NHMRC) of Australia (APP1042654, APP1041795, APP1002761, APP1009533) and the National Institutes of Health (1R56AI095073-01A1) and the Delaney AIDS Research Enterprise (DARE) to find a cure collaboratory (U19 AI096109), the Danish Medical Council and the University of Malaya. SRL is an NHMRC Practitioner Fellow. SRL gratefully acknowledges the contribution to this work of the Victorian Operational Infrastructure Support Program received by the Burnet Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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