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      Towards a more healthy conservation paradigm: integrating disease and molecular ecology to aid biological conservation

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          Abstract

          Parasites, and the diseases they cause, are important from an ecological and evolutionary perspective because they can negatively affect host fitness and can regulate host populations. Consequently, conservation biology has long recognized the vital role that parasites can play in the process of species endangerment and recovery. However, we are only beginning to understand how deeply parasites are embedded in ecological systems, and there is a growing recognition of the important ways in which parasites affect ecosystem structure and function. Thus, there is an urgent need to revisit how parasites are viewed from a conservation perspective and broaden the role that disease ecology plays in conservation-related research and outcomes. This review broadly focusses on the role that disease ecology can play in biological conservation. Our review specifically emphasizes on how the integration of tools and analytical approaches associated with both disease and molecular ecology can be leveraged to aid conservation biology. Our review first concentrates on disease-mediated extinctions and wildlife epidemics. We then focus on elucidating how host–parasite interactions has improved our understanding of the eco-evolutionary dynamics affecting hosts at the individual, population, community and ecosystem scales. We believe that the role of parasites as drivers and indicators of ecosystem health is especially an exciting area of research that has the potential to fundamentally alter our view of parasites and their role in biological conservation. The review concludes with a broad overview of the current and potential applications of modern genomic tools in disease ecology to aid biological conservation.

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          Most cited references268

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          Target-enrichment strategies for next-generation sequencing.

          We have not yet reached a point at which routine sequencing of large numbers of whole eukaryotic genomes is feasible, and so it is often necessary to select genomic regions of interest and to enrich these regions before sequencing. There are several enrichment approaches, each with unique advantages and disadvantages. Here we describe our experiences with the leading target-enrichment technologies, the optimizations that we have performed and typical results that can be obtained using each. We also provide detailed protocols for each technology so that end users can find the best compromise between sensitivity, specificity and uniformity for their particular project.
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            Environmental DNA for wildlife biology and biodiversity monitoring.

            Extraction and identification of DNA from an environmental sample has proven noteworthy recently in detecting and monitoring not only common species, but also those that are endangered, invasive, or elusive. Particular attributes of so-called environmental DNA (eDNA) analysis render it a potent tool for elucidating mechanistic insights in ecological and evolutionary processes. Foremost among these is an improved ability to explore ecosystem-level processes, the generation of quantitative indices for analyses of species, community diversity, and dynamics, and novel opportunities through the use of time-serial samples and unprecedented sensitivity for detecting rare or difficult-to-sample taxa. Although technical challenges remain, here we examine the current frontiers of eDNA, outline key aspects requiring improvement, and suggest future developments and innovations for research. Copyright © 2014 Elsevier Ltd. All rights reserved.
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              Introduced species and their missing parasites.

              Damage caused by introduced species results from the high population densities and large body sizes that they attain in their new location. Escape from the effects of natural enemies is a frequent explanation given for the success of introduced species. Because some parasites can reduce host density and decrease body size, an invader that leaves parasites behind and encounters few new parasites can experience a demographic release and become a pest. To test whether introduced species are less parasitized, we have compared the parasites of exotic species in their native and introduced ranges, using 26 host species of molluscs, crustaceans, fishes, birds, mammals, amphibians and reptiles. Here we report that the number of parasite species found in native populations is twice that found in exotic populations. In addition, introduced populations are less heavily parasitized (in terms of percentage infected) than are native populations. Reduced parasitization of introduced species has several causes, including reduced probability of the introduction of parasites with exotic species (or early extinction after host establishment), absence of other required hosts in the new location, and the host-specific limitations of native parasites adapting to new hosts.
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                Author and article information

                Contributors
                guha@srel.uga.edu
                Journal
                J Genet
                J. Genet
                Journal of Genetics
                Springer India (New Delhi )
                0022-1333
                0973-7731
                21 July 2020
                2020
                : 99
                : 1
                : 65
                Affiliations
                [1 ]GRID grid.213876.9, ISNI 0000 0004 1936 738X, Savannah River Ecology Laboratory, , University of Georgia, ; PO Drawer E, Aiken, SC 29801 USA
                [2 ]GRID grid.213876.9, ISNI 0000 0004 1936 738X, Warnell School of Forestry and Natural Resources, , University of Georgia, ; Athens, GA 30602 USA
                [3 ]GRID grid.494635.9, Indian Institute of Science Education and Research (IISER) Tirupati, ; Transit campus Karakambadi Road, Tirupati, 517507 India
                Author notes

                Corresponding editor: T. N. C. V idya

                Author information
                https://orcid.org/0000-0002-4241-8208
                https://orcid.org/0000-0003-3109-5498
                http://orcid.org/0000-0001-8500-0429
                Article
                1225
                10.1007/s12041-020-01225-7
                7371965
                33622992
                7f304bb9-8082-4149-b38a-59d378b39ce2
                © Indian Academy of Sciences 2020

                This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.

                History
                : 17 January 2019
                : 23 April 2020
                : 25 May 2020
                Funding
                Funded by: U.S. Department of Energy
                Award ID: DE-FC09-96SR18546
                Funded by: Indian Institute of Science Education and Research Tirupati (IN)
                Award ID: Intramural funds
                Award Recipient :
                Categories
                Review Article
                Custom metadata
                © Indian Academy of Sciences 2020

                conservation biology,ecosystem health,genetics,genomics,parasite,epidemiology,pathogen.

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