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      Intratumour microbiota modulates adrenocortical cancer responsiveness to mitotane

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          Abstract

          The infiltrating microbiota represents a novel cellular component of the solid tumour microenvironment that can influence tumour progression and response to therapy. Adrenocortical carcinoma (ACC) is a rare and aggressive endocrine malignancy for which mitotane (MTT) treatment represents the first-line therapy, though its efficacy is limited to a therapeutic window level (14–20 mg/L). Novel markers able to predict those patients who would benefit from MTT therapy are urgently needed to improve patient’s management. The aim of our study was to evaluate the presence of intratumoural bacterial microbiota DNA in 26 human ACC tissues vs 9 healthy adrenals; moreover, the association between the relative bacterial composition profile, the tumour mass characteristics and MTT ability to reach high circulating levels in the early phase of treatment, were explored. We found the presence of bacterial DNA in all adrenal samples from both tumours and healthy cortex specimens, documenting significant differences in the microbial composition between malignancy and normal adrenals: in detail, the ACC tissues were characterised by a higher abundance of the Proteobacteria phylum (especially the Pseudomonas and Serratia genera). In addition, the Proteobacteria’s low abundance was negatively associated with tumour size, Ki67 and cortisol secretion. MTT levels reached higher levels at 9 months in ACC patients with high abundance of Proteobacteria, Pseudomonas and Serratia and with low abundance of Bacteroidota, Firmicutes and Streptococcus. These findings are the first indication that human ACCs are characterised by infiltrating bacteria and their specific abundance profile seems to influence the increase in circulating MTT levels at 9 months.

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          Most cited references37

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          The human tumor microbiome is composed of tumor type–specific intracellular bacteria

          Bacteria were first detected in human tumors more than 100 years ago, but the characterization of the tumor microbiome has remained challenging because of its low biomass. We undertook a comprehensive analysis of the tumor microbiome, studying 1526 tumors and their adjacent normal tissues across seven cancer types, including breast, lung, ovary, pancreas, melanoma, bone, and brain tumors. We found that each tumor type has a distinct microbiome composition and that breast cancer has a particularly rich and diverse microbiome. The intratumor bacteria are mostly intracellular and are present in both cancer and immune cells. We also noted correlations between intratumor bacteria or their predicted functions with tumor types and subtypes, patients’ smoking status, and the response to immunotherapy.
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            Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

            Background The study of microbial communities has been revolutionised in recent years by the widespread adoption of culture independent analytical techniques such as 16S rRNA gene sequencing and metagenomics. One potential confounder of these sequence-based approaches is the presence of contamination in DNA extraction kits and other laboratory reagents. Results In this study we demonstrate that contaminating DNA is ubiquitous in commonly used DNA extraction kits and other laboratory reagents, varies greatly in composition between different kits and kit batches, and that this contamination critically impacts results obtained from samples containing a low microbial biomass. Contamination impacts both PCR-based 16S rRNA gene surveys and shotgun metagenomics. We provide an extensive list of potential contaminating genera, and guidelines on how to mitigate the effects of contamination. Conclusions These results suggest that caution should be advised when applying sequence-based techniques to the study of microbiota present in low biomass environments. Concurrent sequencing of negative control samples is strongly advised. Electronic supplementary material The online version of this article (doi:10.1186/s12915-014-0087-z) contains supplementary material, which is available to authorized users.
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              Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine

              Growing evidence suggests that microbes can influence the efficacy of cancer therapies. By studying colon cancer models, we found that bacteria can metabolize the chemotherapeutic drug gemcitabine (2′,2′-difluorodeoxycytidine) into its inactive form, 2′,2′-difluorodeoxyuridine. Metabolism was dependent on the expression of a long isoform of the bacterial enzyme cytidine deaminase (CDD L ), seen primarily in Gammaproteobacteria. In a colon cancer mouse model, gemcitabine resistance was induced by intra-tumor Gammaproteobacteria, dependent on bacterial CDD L expression, and abrogated by co-treatment with the antibiotic ciprofloxacin. Gemcitabine is commonly used to treat pancreatic ductal adenocarcinoma (PDAC), and we hypothesized that intra-tumor bacteria might contribute to drug resistance of these tumors. Consistent with this possibility, we found that of the 113 human PDACs that were tested, 86 (76%) were positive for bacteria, mainly Gammaproteobacteria.

                Author and article information

                Journal
                Endocr Relat Cancer
                Endocr Relat Cancer
                ERC
                Endocrine-Related Cancer
                Bioscientifica Ltd (Bristol )
                1351-0088
                1479-6821
                11 September 2023
                21 August 2023
                01 October 2023
                : 30
                : 10
                : e230094
                Affiliations
                [1 ]Department of Experimental and Clinical Biomedical Sciences , Endocrinology Section, University of Florence, Florence, Italy
                [2 ]European Network for the Study of Adrenal Tumors (ENS@T) Center of Excellence , Florence, Italy
                [3 ]Centro di Ricerca e Innovazione sulle Patologie Surrenaliche , AOU Careggi, Florence, Italy
                [4 ]Istituto Nazionale Biostrutture e Biosistemi (I.N.B.B.) , via delle Medaglie D’Oro, Rome, Italy
                [5 ]Department of Experimental and Clinical Medicine , University of Florence, Florence, Italy
                [6 ]Department of Experimental and Clinical Biomedical Sciences , Biochemical Sciences Section, University of Florence, Florence, Italy
                [7 ]Department of Clinical and Biological Sciences , Internal Medicine, San Luigi Gonzaga Hospital, University of Turin, Orbassano, Turin, Italy
                [8 ]Department of Health Sciences , Pathology Section, University of Florence, Florence, Italy
                Author notes
                Correspondence should be addressed to A Amedei: amedeo.amedei@ 123456unifi.it

                *(G Cantini and E Niccolai contributed equally to this work)

                Author information
                http://orcid.org/0000-0002-6797-9343
                http://orcid.org/0000-0001-5186-064X
                Article
                ERC-23-0094
                10.1530/ERC-23-0094
                10502960
                37695690
                814d9a8a-d02c-475a-ac88-35a478f912c9
                © the author(s)

                This work is licensed under a Creative Commons Attribution 4.0 International License.

                History
                : 31 March 2023
                : 11 September 2023
                Categories
                Research

                Oncology & Radiotherapy
                microbiota,oncobiome,tumour microenvironment,rare endocrine tumours,bacteria

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