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      adegenet: a R package for the multivariate analysis of genetic markers.

      Bioinformatics (Oxford, England)
      Oxford University Press (OUP)

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          Abstract

          The package adegenet for the R software is dedicated to the multivariate analysis of genetic markers. It extends the ade4 package of multivariate methods by implementing formal classes and functions to manipulate and analyse genetic markers. Data can be imported from common population genetics software and exported to other software and R packages. adegenet also implements standard population genetics tools along with more original approaches for spatial genetics and hybridization.

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          Journal
          18397895
          10.1093/bioinformatics/btn129

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